CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX81375	Canola	nucleus, plastid	37.4	71.88
CDY09785	Canola	nucleus, plastid	63.41	23.49
CDX72207	Canola	cytosol, mitochondrion, nucleus	17.89	23.4
CDX69649	Canola	nucleus, plastid	65.85	22.63
Bra008837.1-P	Field mustard	nucleus, plastid	67.48	21.5
AT5G13310.1	Thale cress	nucleus, plastid	50.41	16.76
CDX69038	Canola	plastid	22.76	13.59
CDY18334	Canola	cytosol	4.88	3.26
CDY24187	Canola	cytosol	0.81	1.23
CDY31896	Canola	nucleus	0.81	0.6
CDX81376	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDX81207	EnsemblPlantsGene:GSBRNA2T00134671001	ProteinID:CDX81207	ProteinID:CDX81207.1	SEG:seg	UniParc:UPI0004EEA751
MapMan:35.2	:	:	:	:	:

Description

BnaC09g06180D

Coordinates

chrLK031824:-:112716..113087

Molecular Weight (calculated)

14001.8 Da

IEP (calculated)

4.086

GRAVY (calculated)

-0.946

Length

123 amino acids

Sequence
(BLAST)

001: MAGEDFQSRV ERIFGSLTFS RSTSSTTSTS SAPLLRQMQW GSVWSLSGAE VEKREWKREQ LASYDREEMP CASSFDEILR QQRISSTDRK EGEEGGDEDF
101: GDEDDDWSIR ASMGLDRTLD DEV

Best Arabidopsis Sequence Match ( AT5G13310.2 )
(BLAST)

001: MASSGSADED FQSRVAKIFG SLPFSRPSSS KFSTSSSAPA SRQQSGSVWT LSDTEVEKRE WKRDSYDRDE IPCASSFDEL LKQQKPSEDD LKDIDCGEDF
101: DGVWSIRASM GLDRTLDDEA EEDEYDKVAL GEENDGEGCG RIRDPRANYV AARIRLKEDE IEANKFNTSA SQPSESKEPH AEESSEAMPR KPILKRKENS
201: SDSEARTSKR VRFDSVPEET LKKPEDTCSA SASSKIVSHQ GKSGARVPDY LLNPSSYTRY SFDPSCELDV ESPTGEYMDT PNAVEGLKNP ESESFPKVSF
301: IPQNKTKDVS EDSSNCNETK PIVAGELAEE ERPSATEDGD TEIRESESCT SFQSKGRQYR AKLSLDETDV

Arabidopsis Description

Uncharacterized protein At5g13310 [Source:UniProtKB/TrEMBL;Acc:Q9LYU5]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.