CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88427
EER91178
EER95117
EES03295
EES05647
EES07849
EES09228
EES17386
KXG22639
KXG22761
KXG29961

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51180.1	EER88427	AT1G01440.1	21798944
AT3G51180.1	EES03295	AT1G01440.1	21798944
AT3G51180.1	KXG22639	AT1G01440.1	21798944
AT3G51180.1	KXG29961	AT1G01440.1	21798944
AT3G51180.1	EER95117	AT2G29400.1	21798944
AT3G51180.1	EER91178	AT2G34710.1	21798944
AT3G51180.1	EES17386	AT2G34710.1	21798944
AT3G51180.1	EES07849	AT3G08530.1	21798944
AT3G51180.1	KXG22761	AT3G08530.1	21798944
AT3G51180.1	EES05647	AT3G27960.1	21798944
AT3G51180.1	EER88427	AT4G01090.1	21798944
AT3G51180.1	EES03295	AT4G01090.1	21798944
AT3G51180.1	KXG22639	AT4G01090.1	21798944
AT3G51180.1	KXG29961	AT4G01090.1	21798944
AT3G51180.1	EES09228	AT5G04170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d001952_P001	Maize	mitochondrion	81.33	80.97
Zm00001d026536_P002	Maize	nucleus	80.89	76.15
Os04t0663200-01	Rice	cytosol	44.0	50.38
TraesCS2B01G520300.1	Wheat	mitochondrion	59.33	49.91
TraesCS2D01G492400.1	Wheat	mitochondrion	59.56	48.38
TraesCS2A01G492200.1	Wheat	mitochondrion	59.33	48.11
HORVU2Hr1G109820.1	Barley	mitochondrion	56.22	47.92
GSMUA_Achr1P19920_001	Banana	cytosol	41.33	41.7
HORVU2Hr1G109740.2	Barley	plastid	56.22	40.94
VIT_18s0001g13880.t01	Wine grape	nucleus	41.11	40.48
GSMUA_Achr3P11230_001	Banana	cytosol	40.0	38.88
CDY62587	Canola	mitochondrion, nucleus	34.44	37.99
KRH51726	Soybean	cytosol, mitochondrion, nucleus, plastid	33.78	37.35
Bra016491.1-P	Field mustard	nucleus	32.44	36.78
CDX83740	Canola	nucleus	31.78	36.11
AT1G19860.2	Thale cress	nucleus	33.11	35.9
CDY39347	Canola	mitochondrion	33.56	35.87
Solyc12g089260.1.1	Tomato	nucleus	38.89	35.86
KRH61063	Soybean	nucleus	34.22	35.81
Bra025776.1-P	Field mustard	extracellular	31.56	35.41
CDY29391	Canola	extracellular	31.56	35.41
PGSC0003DMT400075650	Potato	nucleus	38.44	35.38
Bra012068.1-P	Field mustard	cytosol	11.56	28.89
KRH28783	Soybean	nucleus	20.89	26.93
Solyc02g084080.1.1	Tomato	cytosol	7.33	26.61
KRH28782	Soybean	cytosol, nucleus, plastid	27.78	25.36
KRH69800	Soybean	plastid	31.11	25.23
KRH69802	Soybean	mitochondrion	30.89	24.43
Solyc02g038790.1.1	Tomato	cytosol	10.22	22.89
AT5G66270.1	Thale cress	cytosol	22.22	22.27
CDX73744	Canola	mitochondrion, nucleus	24.0	21.64
CDX77980	Canola	mitochondrion, nucleus, plastid	22.67	21.61
CDY67080	Canola	cytosol, nucleus, plastid	18.89	21.46
AT3G51180.1	Thale cress	nucleus	24.67	21.31
CDY45225	Canola	cytosol, nucleus, plastid	18.67	20.54
KRH76672	Soybean	nucleus	17.56	20.31
Bra036832.1-P	Field mustard	nucleus	22.0	19.96
VIT_04s0023g03180.t01	Wine grape	cytosol	28.67	18.12
Solyc02g084160.1.1	Tomato	cytosol	5.78	16.35
Solyc02g084200.1.1	Tomato	nucleus	21.56	16.33
PGSC0003DMT400009146	Potato	nucleus	21.56	16.03
PGSC0003DMT400092162	Potato	nucleus	17.56	14.08
Solyc02g084110.1.1	Tomato	cytosol	4.22	12.5
PGSC0003DMT400009142	Potato	plasma membrane	14.67	12.22

Protein Annotations

EnsemblPlants:EES13033	EnsemblPlantsGene:SORBI_3006G254600	EntrezGene:8070281	Gene3D:4.10.1000.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR000571	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2
PFAM:PF00642	PFscan:PS50103	ProteinID:EES13033	ProteinID:EES13033.1	RefSeq:XP_002448705.1	SEG:seg
SUPFAM:SSF90229	UniParc:UPI0001A87504	UniProt:C5Y9Y4	MapMan:15.5.16	:	:

Description

hypothetical protein

Coordinates

chr6:-:59214778..59221143

Molecular Weight (calculated)

48834.5 Da

IEP (calculated)

6.573

GRAVY (calculated)

-0.529

Length

450 amino acids

Sequence
(BLAST)

001: MMGSRRSKRV SWATGANLCK VRLFLSEDSP SQAGLRPQDN LQAKGSWLMH AAGPSSDDSL PPGFESLQPT SDLKIDISQI PLIRWRCPPQ ILYNPDWLVV
101: AGEESEEVAL QNERIFGALE AIYPRPSNIP PNPLVTPDVK DSQFDDSRTQ LVPLIPVEED DASDQLEEPP VGLPSSHHQS DKYDSAIFRA PPASDAPFTQ
201: PNGSINATRS GAPVEPDAVA AASAAYTAIM QSNQMGNMID QDLLIKILSD PAQIERLMKE YGALKHEQST NSSVVPMVQG PPPQMTASVP VSFPDHSTTF
301: HNVNPTLPPP PVLNHLPPAI PSGTMNAPAS SSQAISFPSG PARGLNYYQS LIHQHGGERQ EPLQQHGRQF AMHHQPVASQ ASATDIVSSG TMAARDNKQR
401: PTKPCAYFNS ARGCRNGANC TFLHDMSAAR KEQPKGSKRI KLDSRIAGRY

Best Arabidopsis Sequence Match ( AT1G19860.1 )
(BLAST)

001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD

Arabidopsis Description

Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.