Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 5
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G492200.1 | Wheat | mitochondrion | 97.2 | 93.69 |
| TraesCS2D01G492400.1 | Wheat | mitochondrion | 96.64 | 93.32 |
| HORVU2Hr1G109820.1 | Barley | mitochondrion | 80.56 | 81.63 |
| HORVU2Hr1G109740.2 | Barley | plastid | 80.75 | 69.9 |
| EES13033 | Sorghum | mitochondrion | 49.91 | 59.33 |
| Zm00001d001952_P001 | Maize | mitochondrion | 47.85 | 56.64 |
| Zm00001d026536_P002 | Maize | nucleus | 47.1 | 52.72 |
| Os04t0663200-01 | Rice | cytosol | 37.01 | 50.38 |
| GSMUA_Achr1P19920_001 | Banana | cytosol | 34.39 | 41.26 |
| VIT_18s0001g13880.t01 | Wine grape | nucleus | 33.46 | 39.17 |
| GSMUA_Achr3P11230_001 | Banana | cytosol | 33.64 | 38.88 |
| CDY62587 | Canola | mitochondrion, nucleus | 28.41 | 37.25 |
| Bra016491.1-P | Field mustard | nucleus | 27.48 | 37.03 |
| Bra025776.1-P | Field mustard | extracellular | 27.66 | 36.91 |
| CDY29391 | Canola | extracellular | 27.66 | 36.91 |
| AT1G19860.2 | Thale cress | nucleus | 28.22 | 36.39 |
| CDX83740 | Canola | nucleus | 26.92 | 36.36 |
| CDY39347 | Canola | mitochondrion | 28.6 | 36.34 |
| KRH51726 | Soybean | cytosol, mitochondrion, nucleus, plastid | 27.1 | 35.63 |
| KRH61063 | Soybean | nucleus | 28.6 | 35.58 |
| PGSC0003DMT400075650 | Potato | nucleus | 31.78 | 34.76 |
| Bra012068.1-P | Field mustard | cytosol | 11.59 | 34.44 |
| Solyc12g089260.1.1 | Tomato | nucleus | 31.4 | 34.43 |
| KRH28783 | Soybean | nucleus | 19.81 | 30.37 |
| Solyc02g084080.1.1 | Tomato | cytosol | 6.92 | 29.84 |
| KRH69800 | Soybean | plastid | 27.1 | 26.13 |
| KRH28782 | Soybean | cytosol, nucleus, plastid | 23.74 | 25.76 |
| KRH69802 | Soybean | mitochondrion | 26.54 | 24.96 |
| Solyc02g038790.1.1 | Tomato | cytosol | 9.35 | 24.88 |
| AT5G66270.1 | Thale cress | cytosol | 20.56 | 24.5 |
| CDY67080 | Canola | cytosol, nucleus, plastid | 17.94 | 24.24 |
| AT3G51180.1 | Thale cress | nucleus | 23.18 | 23.8 |
| CDY45225 | Canola | cytosol, nucleus, plastid | 17.57 | 22.98 |
| CDX77980 | Canola | mitochondrion, nucleus, plastid | 19.63 | 22.25 |
| CDX73744 | Canola | mitochondrion, nucleus | 20.56 | 22.04 |
| Bra036832.1-P | Field mustard | nucleus | 19.44 | 20.97 |
| KRH76672 | Soybean | nucleus | 14.95 | 20.57 |
| VIT_04s0023g03180.t01 | Wine grape | cytosol | 26.36 | 19.8 |
| Solyc02g084160.1.1 | Tomato | cytosol | 5.79 | 19.5 |
| PGSC0003DMT400009146 | Potato | nucleus | 21.12 | 18.68 |
| Solyc02g084200.1.1 | Tomato | nucleus | 20.19 | 18.18 |
| PGSC0003DMT400092162 | Potato | nucleus | 16.26 | 15.51 |
| PGSC0003DMT400009142 | Potato | plasma membrane | 13.83 | 13.7 |
| Solyc02g084110.1.1 | Tomato | cytosol | 3.55 | 12.5 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G520300.1 | EnsemblPlantsGene:TraesCS2B01G520300 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000571 |
| InterPro:Znf_CCCH | PANTHER:PTHR33400 | PANTHER:PTHR33400:SF2 | PFscan:PS50103 | SEG:seg | MapMan:15.5.16 |
Description
No Description!
Coordinates
chr2B:+:714786741..714792137
Molecular Weight (calculated)
57523.4 Da
IEP (calculated)
7.125
GRAVY (calculated)
-0.735
Length
535 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSRRSRRVS WATGPSLCKV RLFISEDSPS QAGLRPQDNL QAKGSASLMH AASPSSDDSL PPGFESLQPA NDLKIDISQI PLIRWKCPPH ILLNPNWHLA
101: SGEESTEIAV QNERMFGVLE AIYPRASNIP PNPFVSPDVK DSHYDDSGTP LVPVIPVEDD DASDQSEGPL LEQPNDYHQS DNYGPAEINA LQVSNTPITP
201: AQQQPGGSTG VEADVLAAAS AAYTAIMQSN QKGSMVDRDL LVKILSDPVQ VERLMKEYNQ IRNEQSTSSS VVAPAPPCPP PQMTMTAPAS YSNHMTTFQN
301: TNSTLPPPMA PRPMMNRPPQ GYPPVPMNHP PGSGPAMNLP PGSNPAMSHR PGSNPPMSHP PGSNPPMSHP PGSNPPMSRP PGSNPAMSHP LGSNPAMSHA
401: PGSNPAMSYP PGSSSPAMNF SGAPPRAINY YKTLIHQHGG ERQESFEQHG RQFGMYHQSA PPQTNGIDAM NGASMVNRDT KTRPTRPCAY FNGPRGCRNG
501: ANCTFLHESS ATSRQQEQQN GSKRIKLDSR ITGRN
101: SGEESTEIAV QNERMFGVLE AIYPRASNIP PNPFVSPDVK DSHYDDSGTP LVPVIPVEDD DASDQSEGPL LEQPNDYHQS DNYGPAEINA LQVSNTPITP
201: AQQQPGGSTG VEADVLAAAS AAYTAIMQSN QKGSMVDRDL LVKILSDPVQ VERLMKEYNQ IRNEQSTSSS VVAPAPPCPP PQMTMTAPAS YSNHMTTFQN
301: TNSTLPPPMA PRPMMNRPPQ GYPPVPMNHP PGSGPAMNLP PGSNPAMSHR PGSNPPMSHP PGSNPPMSHP PGSNPPMSRP PGSNPAMSHP LGSNPAMSHA
401: PGSNPAMSYP PGSSSPAMNF SGAPPRAINY YKTLIHQHGG ERQESFEQHG RQFGMYHQSA PPQTNGIDAM NGASMVNRDT KTRPTRPCAY FNGPRGCRNG
501: ANCTFLHESS ATSRQQEQQN GSKRIKLDSR ITGRN
001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD
Arabidopsis Description
Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.