CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra012068.1-P	Field mustard	cytosol	34.72	78.89
CDY67080	Canola	cytosol, nucleus, plastid	67.24	69.44
AT5G66270.1	Thale cress	cytosol	40.59	36.97
Solyc02g084080.1.1	Tomato	cytosol	9.29	30.65
CDX77980	Canola	mitochondrion, nucleus, plastid	33.5	29.03
CDX73744	Canola	mitochondrion, nucleus	34.23	28.06
Solyc02g038790.1.1	Tomato	cytosol	13.2	26.87
KRH28782	Soybean	cytosol, nucleus, plastid	28.61	23.73
CDY62587	Canola	mitochondrion, nucleus	22.25	22.3
KRH69800	Soybean	plastid	29.83	21.98
KRH69802	Soybean	mitochondrion	30.32	21.79
CDY39347	Canola	mitochondrion	22.0	21.38
CDX83740	Canola	nucleus	20.29	20.96
CDY29391	Canola	extracellular	20.05	20.45
GSMUA_Achr3P11230_001	Banana	cytosol	22.25	19.65
KRH76672	Soybean	nucleus	18.58	19.54
GSMUA_Achr1P19920_001	Banana	cytosol	20.78	19.06
Solyc02g084160.1.1	Tomato	cytosol	7.33	18.87
EES13033	Sorghum	mitochondrion	20.54	18.67
KRH28783	Soybean	nucleus	15.89	18.62
Solyc02g084200.1.1	Tomato	nucleus	26.65	18.35
Zm00001d001952_P001	Maize	mitochondrion	20.05	18.14
Os04t0663200-01	Rice	cytosol	17.36	18.07
Solyc02g084110.1.1	Tomato	cytosol	6.6	17.76
TraesCS2B01G520300.1	Wheat	mitochondrion	22.98	17.57
HORVU2Hr1G109820.1	Barley	mitochondrion	22.49	17.42
PGSC0003DMT400009146	Potato	nucleus	25.67	17.36
Zm00001d026536_P002	Maize	nucleus	20.05	17.15
TraesCS2D01G492400.1	Wheat	mitochondrion	22.74	16.79
TraesCS2A01G492200.1	Wheat	mitochondrion	22.49	16.58
VIT_04s0023g03180.t01	Wine grape	cytosol	26.89	15.45
HORVU2Hr1G109740.2	Barley	plastid	22.98	15.21
PGSC0003DMT400009142	Potato	plasma membrane	20.05	15.19
PGSC0003DMT400092162	Potato	nucleus	20.29	14.79

Protein Annotations

EnsemblPlants:CDY45225	EnsemblPlantsGene:GSBRNA2T00081659001	GO:A0A078I2Y0	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR000571	InterPro:Znf_CCCH	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2	PFscan:PS50103	ProteinID:CDY45225
ProteinID:CDY45225.1	SEG:seg	UniParc:UPI0004EDC625	UniProt:A0A078I2Y0	MapMan:15.5.16	:

Description

BnaA07g12650DBnaA07g12650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2Y0]

Coordinates

chrLK032618:+:100599..103077

Molecular Weight (calculated)

44281.7 Da

IEP (calculated)

9.828

GRAVY (calculated)

-0.422

Length

409 amino acids

Sequence
(BLAST)

001: MGSNVKKARV SWPSDSMLCQ VKMFKTEDYP AKVGAQTCSK SKASKDLQRG TVPPNIPLIK WKLPPKFILS NHLLVASGED STETGSENLR IAKVLEGFYP
101: HRSLIHSRPF ISPAAVQVDD TNTPTIRVTP IEDDDEQPAL QSSIASPSFF GLGPDLSLTA LAALLNTKEQ GSLVNADLLV KFLTDPTIIN NLLNAAAKPL
201: ETGNNNNTTK PPPQHVTTSS ANSPPGNGVT PFLAAAQSIV SHVPTQPMAP LVLNTYPSSC AVKPLPRVEK SLETSSVVVS EPQCRSGTWN MSRVEESAGT
301: GTDAQSAYAM NITRDDYFKN LIREHGGVVA PATNNNKRRF DNNNNNNDDK KKALAVKVKS QKPCMFFGRG RGCKLGESCL YLHDPSKRLS TYDVAAAAAP
401: RAKRLKFRT

Best Arabidopsis Sequence Match ( AT5G66270.1 )
(BLAST)

001: MMKKTKKGRV SWASDSMLCQ VKLFLSDDCP VKVASNLPPG FEATDYATKR IISHIPRIKW KRPPLFVLDD ALLVGSGGKS IETRSENLRI SKVLEAFYPH
101: RSVIPSRPSL TLAVEEEHYD DGKTPNIPLT HVEDERDAAA ESSHSFEAPA AVSGLGPELS LLASAALSAL TKEQGSQVDP DLLVKLLSDP KIVENLINGM
201: KGKPLETANN SLNTDITEPR LAPQHVTSTT MDRNPPPMPG NVAPHNVPVS VQSSATDPPL PKPNQPMSSA LSMNLTLQKP TPVVHNYPLS SGIKVEDSYT
301: AAPLKPSTGD DVVVSEQKTQ LLFPCSSWNM NKVPESARTE TDPQIRNGNT NRDDQVSAKP VKDLDYFKNL IREHGAVKPA TTETNNYKGR VDHKKIVKVR
401: IQKPCMYFNR PKGCRMGESC LYLHDSSKRL WTDVAPPHFP RAKRLKFGS

Arabidopsis Description

Zinc finger CCCH domain-containing protein 68 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH61]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.