Factsheet for Solyc02g038790.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g024070.2.1
Solyc02g069830.2.1
Solyc02g086840.2.1
Solyc03g096000.2.1
Solyc04g016400.2.1
Solyc05g052510.2.1
Solyc06g005800.2.1
Solyc06g051310.2.1
Solyc06g076430.2.1
Solyc10g079890.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51180.1	Solyc06g005800.2.1	AT2G29400.1	21798944
AT3G51180.1	Solyc06g076430.2.1	AT2G29400.1	21798944
AT3G51180.1	Solyc02g024070.2.1	AT2G34710.1	21798944
AT3G51180.1	Solyc02g069830.2.1	AT2G34710.1	21798944
AT3G51180.1	Solyc03g096000.2.1	AT3G08530.1	21798944
AT3G51180.1	Solyc05g052510.2.1	AT3G08530.1	21798944
AT3G51180.1	Solyc06g051310.2.1	AT3G08530.1	21798944
AT3G51180.1	Solyc02g086840.2.1	AT3G27960.1	21798944
AT3G51180.1	Solyc04g016400.2.1	AT5G04170.1	21798944
AT3G51180.1	Solyc10g079890.1.1	AT5G04170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g084080.1.1	Tomato	cytosol	21.39	34.68
Solyc02g084160.1.1	Tomato	cytosol	24.38	30.82
Solyc02g084110.1.1	Tomato	cytosol	20.9	27.63
Bra012068.1-P	Field mustard	cytosol	21.39	23.89
PGSC0003DMT400092162	Potato	nucleus	54.73	19.61
Solyc02g084200.1.1	Tomato	nucleus	41.29	13.97
CDY45225	Canola	cytosol, nucleus, plastid	26.87	13.2
KRH28783	Soybean	nucleus	22.89	13.18
CDY67080	Canola	cytosol, nucleus, plastid	25.87	13.13
AT5G66270.1	Thale cress	cytosol	25.87	11.58
KRH28782	Soybean	cytosol, nucleus, plastid	28.36	11.56
CDX73744	Canola	mitochondrion, nucleus	27.86	11.22
CDX77980	Canola	mitochondrion, nucleus, plastid	25.87	11.02
AT3G51180.1	Thale cress	nucleus	28.36	10.94
KRH69802	Soybean	mitochondrion	29.85	10.54
Bra036832.1-P	Field mustard	nucleus	25.87	10.48
KRH69800	Soybean	plastid	28.86	10.45
GSMUA_Achr1P19920_001	Banana	cytosol	22.89	10.31
Solyc12g089260.1.1	Tomato	nucleus	24.88	10.25
EES13033	Sorghum	mitochondrion	22.89	10.22
GSMUA_Achr3P11230_001	Banana	cytosol	23.38	10.15
Zm00001d001952_P001	Maize	mitochondrion	22.39	9.96
Zm00001d026536_P002	Maize	nucleus	22.89	9.62
Os04t0663200-01	Rice	cytosol	18.41	9.41
TraesCS2B01G520300.1	Wheat	mitochondrion	24.88	9.35
TraesCS2D01G492400.1	Wheat	mitochondrion	24.88	9.03
HORVU2Hr1G109820.1	Barley	mitochondrion	23.38	8.9
TraesCS2A01G492200.1	Wheat	mitochondrion	24.38	8.83
KRH76672	Soybean	nucleus	16.42	8.48
VIT_04s0023g03180.t01	Wine grape	cytosol	27.86	7.87
HORVU2Hr1G109740.2	Barley	plastid	23.38	7.61

Protein Annotations

EnsemblPlants:Solyc02g038790.1.1	EnsemblPlantsGene:Solyc02g038790.1	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2	SEG:seg	UniParc:UPI0002767ACC
UniProt:K4B5X1	MapMan:35.2	:	:	:	:

Description

No Description!

Coordinates

chr2:+:31557239..31558412

Molecular Weight (calculated)

22661.9 Da

IEP (calculated)

8.689

GRAVY (calculated)

-0.589

Length

201 amino acids

Sequence
(BLAST)

001: MNIKEVKHYQ KEDCPSEVGS RSQQHTYQSI NGSSYERRDC LKKSEERLSS KSLAIWKYPP KFHLNKKWRL VDGKESEEAI KQVNRKRTVI EAVFHNKFAF
101: PPNQTPVVRT ISVEEEPTHD LTILVATTVA ALQEQGSLID ANLLVRLLLN LMNERSMDTD AVSLNAAHAG SVKFVPLTMT KPETSVNEQG APSTANIRES
201: T

Best Arabidopsis Sequence Match ( AT1G19860.1 )
(BLAST)

001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD

Arabidopsis Description

Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.