Factsheet for Solyc10g079890.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 20363867
plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076703	Potato	cytosol, plastid	97.94	96.8
Solyc04g016400.2.1	Tomato	cytosol	53.53	75.21
GSMUA_AchrUn_...	Banana	cytosol	39.41	74.86
KRH33201	Soybean	endoplasmic reticulum	59.41	71.13
Zm00001d052458_P001	Maize	extracellular	61.18	70.27
EES09228	Sorghum	cytosol	62.35	69.74
TraesCS5B01G135100.1	Wheat	cytosol, nucleus, plastid	61.47	68.98
GSMUA_Achr8P17120_001	Banana	cytosol, plasma membrane, plastid	56.18	68.46
Os12t0137100-01	Rice	cytosol, nucleus, plastid	57.65	67.12
CDY56710	Canola	cytosol, extracellular, plastid	55.59	66.78
Os11t0140600-01	Rice	cytosol	58.82	64.94
Bra034103.1-P	Field mustard	cytosol	58.24	62.07
CDY41334	Canola	cytosol	58.24	61.88
TraesCS4D01G127600.1	Wheat	cytosol	57.94	60.99
TraesCS4B01G132800.1	Wheat	nucleus	58.24	60.37
TraesCS4A01G186100.1	Wheat	golgi	57.35	60.0
CDY67472	Canola	cytosol	52.65	59.67
TraesCS5D01G142800.1	Wheat	nucleus	56.76	58.13
TraesCS5A01G136100.1	Wheat	nucleus	56.47	57.66
AT5G04170.1	Thale cress	cytosol	58.53	56.21
Bra009480.1-P	Field mustard	cytosol	57.65	53.7
CDX70254	Canola	cytosol	56.76	52.88
HORVU5Hr1G043650.2	Barley	plastid	59.41	52.47
HORVU4Hr1G026030.9	Barley	cytosol	49.41	51.38
CDX80907	Canola	cytosol	59.12	49.75
KRH72037	Soybean	cytosol, plasma membrane, plastid	35.88	47.1
CDY41394	Canola	mitochondrion	55.29	46.53
Bra005797.1-P	Field mustard	cytosol	55.88	46.23
Solyc11g068460.1.1	Tomato	cytosol, plastid	33.24	45.38
AT3G10300.6	Thale cress	cytosol	49.71	44.83

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674
GO:GO:0003824	GO:GO:0004198	GO:GO:0005488	GO:GO:0005509	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787
GO:GO:0019538	InterPro:IPR002048	UniProt:K4D2N0	PFAM:PF00036	PFAM:PF13202	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR10183	PANTHER:PTHR10183:SF372	SMART:SM00054	SUPFAM:SSF47473	EnsemblPlantsGene:Solyc10g079890.1
EnsemblPlants:Solyc10g079890.1.1	UniParc:UPI000276AA1E	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10:-:61354043..61356708

Molecular Weight (calculated)

36071.8 Da

IEP (calculated)

6.788

GRAVY (calculated)

-0.553

Length

340 amino acids

Sequence
(BLAST)

001: MSGYPHNVPG YGYGQPPSSQ PYSSTPYGAP PPSSASPYGA PPPSSASPYG ASPSPYGAPP SPYGAPPPQS HSPYAPVPSP YGAGAPSYGD PHKPPKENKP
101: QSSSPYGGAG AGYPAPPPSA PYGDPNKPPK DSHSQPSAPY GGYHAPPPAG PYGASSPFAS LVPSAFPPGT DPNIVACFQL ADQDGSGLID DKELQKALSS
201: YNQSFSLRTV HLLMYLFTNT NTRKIGPKEF TSVFYSLQEW RGIFERFDRD RSGKIDSSEL RDALLSLGYA VSPSILELLV SKFDKTGGKS RAIEYDNFIE
301: CCLTVKGLTE KFKEKDTSYS GSATFTYESF MLTVLPFLIA

Best Arabidopsis Sequence Match ( AT3G10300.3 )
(BLAST)

001: MSGYPPSSQG YGYGGNPPPP QPPYGSTGNN PPPYGSSGSN PPPPYGSSAS SPYAVPYGAQ PAPYGAPPSA PYASLPGDHN KPHKEKPHGA SYGSPSPGGY
101: GAHPSSGPSD YGGYGGAPQQ SGHGGGYGGA PQQSGHGGGY GAPPPQASYG SPFASLVPSA FPPGTDPNIV ACFQAADRDN SGFIDDKELQ GALSSYNQSF
201: SIRTVHLLMY LFTNSNVRKI GPKEFTSLFF SLQNWRSIFE RFDKDRSGRI DTNELRDALM SLGFSVSPVI LDLLVSKFDK SGGRNRAIEY DNFIECCLTV
301: KGLTEKFKEK DTALSGSAIF NYENFMLTVL PFLVA

Arabidopsis Description

Calcium-binding EF-hand family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.