CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 2
endoplasmic reticulum 3
vacuole 2
plasma membrane 2
golgi 2
cytosol 1
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70254	Canola	cytosol	78.96	87.4
GSMUA_AchrUn_...	Banana	cytosol	31.93	72.07
Solyc04g016400.2.1	Tomato	cytosol	41.34	69.01
CDY56710	Canola	cytosol, extracellular, plastid	48.27	68.9
PGSC0003DMT400033117	Potato	cytosol	42.08	66.15
Os12t0137100-01	Rice	cytosol, nucleus, plastid	47.52	65.75
CDY67472	Canola	cytosol	48.51	65.33
VIT_00s0252g00130.t01	Wine grape	cytosol, plasma membrane, plastid	44.55	65.22
GSMUA_Achr8P17120_001	Banana	cytosol, plasma membrane, plastid	44.31	64.16
EES09228	Sorghum	cytosol	48.02	63.82
Bra009480.1-P	Field mustard	cytosol	57.43	63.56
Zm00001d052458_P001	Maize	extracellular	46.53	63.51
CDY41334	Canola	cytosol	49.75	62.81
Os11t0140600-01	Rice	cytosol	47.28	62.01
AT5G04170.1	Thale cress	cytosol	54.21	61.86
TraesCS5B01G135100.1	Wheat	cytosol, nucleus, plastid	45.3	60.4
TraesCS4D01G127600.1	Wheat	cytosol	47.03	58.82
TraesCS4B01G132800.1	Wheat	nucleus	47.52	58.54
TraesCS4A01G186100.1	Wheat	golgi	46.78	58.15
Solyc10g079890.1.1	Tomato	plastid	46.53	55.29
TraesCS5D01G142800.1	Wheat	nucleus	45.3	55.12
PGSC0003DMT400076703	Potato	cytosol, plastid	46.78	54.94
TraesCS5A01G136100.1	Wheat	nucleus	45.05	54.65
CDX80907	Canola	cytosol	52.97	52.97
HORVU4Hr1G026030.9	Barley	cytosol	40.1	49.54
HORVU5Hr1G043650.2	Barley	plastid	45.79	48.05
KRH72037	Soybean	cytosol, plasma membrane, plastid	27.48	42.86
CDX83268	Canola	cytosol	21.04	38.12
CDY31179	Canola	cytosol	20.54	37.22

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	GO:A0A078HVL4	UniProt:A0A078HVL4	EnsemblPlants:CDY41394	ProteinID:CDY41394
ProteinID:CDY41394.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	EnsemblPlantsGene:GSBRNA2T00072979001	InterPro:IPR002048	PFAM:PF13202	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR10183	PANTHER:PTHR10183:SF372	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0004EE1A3B	SEG:seg

Description

BnaCnng10300DBnaCnng10300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVL4]

Coordinates

chrLK032497:-:75358..77419

Molecular Weight (calculated)

42710.2 Da

IEP (calculated)

9.211

GRAVY (calculated)

-0.433

Length

404 amino acids

Sequence
(BLAST)

001: MTRVVLICLT KLKKVKPLLL RSLLINQKKK FGFFLKPFPA MSGYPPTSQG YGYGYGGGNQ PPPPQPPYSS TGNNPPTSQG HGYSYGGGNN PPYGSSSPYA
101: VPYGASKPQS SSAPSAPPYA PSPPPPGDFN PPNEKPFGGG YGASPPSGPY GAAPPRPGGY GAAPPHSEYG GYGAAPRPYG GYGAAAPPSG VPEYGGYGGA
201: PPRPGGYGGY PSPQGSSYGS PFASLVPSGF APGTDPNIVA CFQAADQDGS GFIDDKELQG ALSSYQQRFS MRTVHLLMYL FTNTNAMKIG PKEFTALFYS
301: LQNWRSIFER SDKDRSGRID VSELRDALLS LGFSVSPVIL DLLVSKFDKS GGKNRAIEYD NFIECCLTVK GLTEKFKEKD TGYSGSATFT YESFMLTVLP
401: FLIA

Best Arabidopsis Sequence Match ( AT5G04170.1 )
(BLAST)

001: MSGYPPTSQG YGYGYGGGNQ PPPPQPPYSS GGNNPPYGSS TTSSPYAVPY GASKPQSSSS SAPTYGSSSY GAPPPSAPYA PSPGDYNKPP KEKPYGGGYG
101: APPPSGSSDY GSYGAGPRPS QPSGHGGGYG ATPPHGVSDY GSYGGAPPRP ASSGHGGGYG GYPPQASYGS PFASLIPSGF APGTDPNIVA CFQAADQDGS
201: GFIDDKELQG ALSSYQQRFS MRTVHLLMYL FTNSNAMKIG PKEFTALFYS LQNWRSIFER SDKDRSGRID VNELRDALLS LGFSVSPVVL DLLVSKFDKS
301: GGKNRAIEYD NFIECCLTVK GLTEKFKEKD TAYSGSATFN YESFMLTVLP FLIA

Arabidopsis Description

CML50Probable calcium-binding protein CML50 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.