Factsheet for PGSC0003DMT400076703

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 3
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g079890.1.1	Tomato	plastid	96.8	97.94
GSMUA_AchrUn_...	Banana	cytosol	39.24	75.42
PGSC0003DMT400033117	Potato	cytosol	55.52	74.32
KRH33201	Soybean	endoplasmic reticulum	58.72	71.13
Zm00001d052458_P001	Maize	extracellular	60.47	70.27
EES09228	Sorghum	cytosol	61.63	69.74
TraesCS5B01G135100.1	Wheat	cytosol, nucleus, plastid	60.47	68.65
GSMUA_Achr8P17120_001	Banana	cytosol, plasma membrane, plastid	55.52	68.46
Os12t0137100-01	Rice	cytosol, nucleus, plastid	57.56	67.81
CDY56710	Canola	cytosol, extracellular, plastid	54.65	66.43
Os11t0140600-01	Rice	cytosol	58.72	65.58
Bra034103.1-P	Field mustard	cytosol	57.56	62.07
CDY41334	Canola	cytosol	57.56	61.88
TraesCS4D01G127600.1	Wheat	cytosol	57.56	61.3
TraesCS4B01G132800.1	Wheat	nucleus	57.85	60.67
TraesCS4A01G186100.1	Wheat	golgi	56.98	60.31
CDY67472	Canola	cytosol	51.74	59.33
TraesCS5D01G142800.1	Wheat	nucleus	56.1	58.13
TraesCS5A01G136100.1	Wheat	nucleus	55.81	57.66
AT5G04170.1	Thale cress	cytosol	57.85	56.21
Bra009480.1-P	Field mustard	cytosol	56.98	53.7
CDX70254	Canola	cytosol	56.1	52.88
HORVU5Hr1G043650.2	Barley	plastid	58.43	52.21
HORVU4Hr1G026030.9	Barley	cytosol	49.42	51.99
CDX80907	Canola	cytosol	58.72	50.0
KRH72037	Soybean	cytosol, plasma membrane, plastid	35.47	47.1
CDY41394	Canola	mitochondrion	54.94	46.78
Bra005797.1-P	Field mustard	cytosol	55.52	46.47
AT3G10300.6	Thale cress	cytosol	49.13	44.83
PGSC0003DMT400067730	Potato	cytosol, plastid	27.62	32.76

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:102606439	MapMan:35.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	UniProt:M1CX89	PFAM:PF00036
PFAM:PF13202	EnsemblPlantsGene:PGSC0003DMG400029828	PGSC:PGSC0003DMG400029828	EnsemblPlants:PGSC0003DMT400076703	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR10183	PANTHER:PTHR10183:SF372	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI000294AC93	RefSeq:XP_006351292.1
SEG:seg	:	:	:	:	:

Description

EF hand family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400029828]

Coordinates

chr10:+:57960250..57963247

Molecular Weight (calculated)

36523.3 Da

IEP (calculated)

6.877

GRAVY (calculated)

-0.581

Length

344 amino acids

Sequence
(BLAST)

001: MSGYPHNVPG YGYGQPPSSQ PYSSTPYGAP PPSSASPYGA PPPSSSSPYG ASPSPYGAPP PHSSSPYGAP PPQSHSPYAP VPSTYGAGAP PYGDPHKPPK
101: ENKPQSSSPY GGAGAGYPAP PPSAPYGDPN KPPKDSHSQP SAPYGGYHAP PPAGPYGASS PFASLVPSAF PPGTDPNVIA CFQLADQDGS GLIDDKELQK
201: ALSSYNQSFS LRTVHLLMYL FTNTNTRKIG PKEFTSVFYS LQEWRGIFER FDRDRSGKID SSELRDALLS LGYAVSPSIL DLLVSKFDKT GGKNRAIEYD
301: NFIECCLTVK GLTEKFKEKD TSYSGSATFT YESFMLTVLP FLIA

Best Arabidopsis Sequence Match ( AT3G10300.3 )
(BLAST)

001: MSGYPPSSQG YGYGGNPPPP QPPYGSTGNN PPPYGSSGSN PPPPYGSSAS SPYAVPYGAQ PAPYGAPPSA PYASLPGDHN KPHKEKPHGA SYGSPSPGGY
101: GAHPSSGPSD YGGYGGAPQQ SGHGGGYGGA PQQSGHGGGY GAPPPQASYG SPFASLVPSA FPPGTDPNIV ACFQAADRDN SGFIDDKELQ GALSSYNQSF
201: SIRTVHLLMY LFTNSNVRKI GPKEFTSLFF SLQNWRSIFE RFDKDRSGRI DTNELRDALM SLGFSVSPVI LDLLVSKFDK SGGRNRAIEY DNFIECCLTV
301: KGLTEKFKEK DTALSGSAIF NYENFMLTVL PFLVA

Arabidopsis Description

Calcium-binding EF-hand family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.