Factsheet for PGSC0003DMT400067730

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400066530

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27480.1	PGSC0003DMT400066530	AT1G49840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g068460.1.1	Tomato	cytosol, plastid	68.28	79.52
VIT_06s0080g00450.t01	Wine grape	plastid	45.52	58.67
KRH26648	Soybean	cytosol, plastid	40.69	55.4
KRH22671	Soybean	cytosol, plastid	41.03	54.59
GSMUA_Achr3P22660_001	Banana	plastid	42.41	52.12
Zm00001d049940_P002	Maize	cytosol	37.24	42.02
TraesCS7A01G134000.1	Wheat	cytosol	36.9	41.63
Os08t0558100-01	Rice	cytosol	36.21	41.5
EES14088	Sorghum	cytosol	37.59	40.37
TraesCS7D01G133400.1	Wheat	cytosol	35.86	40.15
CDX83268	Canola	cytosol	30.34	39.46
Bra000510.1-P	Field mustard	cytosol	30.0	39.01
CDY31179	Canola	cytosol	29.66	38.56
AT2G27480.1	Thale cress	cytosol, nucleus, peroxisome	29.66	37.72
HORVU7Hr1G027810.6	Barley	cytosol	35.17	37.64
TraesCS7B01G035100.1	Wheat	cytosol	33.79	36.16
PGSC0003DMT400033117	Potato	cytosol	31.72	35.8
PGSC0003DMT400076703	Potato	cytosol, plastid	32.76	27.62

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:102604258	MapMan:35.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005509	InterPro:IPR002048	UniProt:M1CHS5	PFAM:PF13202
PFAM:PF13405	EnsemblPlantsGene:PGSC0003DMG400026341	PGSC:PGSC0003DMG400026341	EnsemblPlants:PGSC0003DMT400067730	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR10183	PANTHER:PTHR10183:SF372	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI000295ADDB	RefSeq:XP_015158694.1
SEG:seg	:	:	:	:	:

Description

Ef-hand calcium binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400026341]

Coordinates

chr11:-:40405320..40408958

Molecular Weight (calculated)

32795.8 Da

IEP (calculated)

7.968

GRAVY (calculated)

-0.405

Length

290 amino acids

Sequence
(BLAST)

001: MSSYGNRPSY SPSAPPLSDP NEPPIAHPYH PPPSSSSANY SNYPHQSQPQ TAGYGPGSSY GYYQNPPNYG SGFPPGTDPQ VIQSFQMVDR DCSGFVEEKE
101: LQQALSSGYQ RFSLRTIRLL IFLFKNPSEY FPRIGPKEFA ALWSCLGQWR AIFERFDRDR SGKIDATELR DALYSLGYMV PPSVLEVLIS RYTDGSGRRP
201: ELCFDSFVEC GMVVKVKELI SFYKHFLTQY LDLCICAASM YFPSSLPHIK VCLLLGLERR LTIISVKPSL SLQSYPSYNT EFRRKCDNSN

Best Arabidopsis Sequence Match ( AT2G27480.1 )
(BLAST)

001: MSYSNAYAPS APELPESFVQ QQHDGESRYT YAYPSYQPTQ QFSSYSGMFS PETHPEIVRS FESADRNRSG FLEESELRQA LSLSGYDGIS NRTIRLLLFI
101: YKIPVDSLLR LGPKEYVELW NCLAQWRAIF NRYDRDRSGK MNSTQLRDAF YNLGCVLPTS VHQLIVSQFD DGTGKTVDLC FDSFLECGMI VKGLTEKFRE
201: NDPGYTGYAT LSYDVFMLMV IPFIATYD

Arabidopsis Description

CML48Probable calcium-binding protein CML48 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQH1]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.