Factsheet for Zm00001d049940_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006749_P001
Zm00001d013746_P001
Zm00001d016585_P002
Zm00001d022006_P001
Zm00001d030837_P001
Zm00001d047324_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27480.1	Zm00001d006749_P001	AT1G49840.1	21798944
AT2G27480.1	Zm00001d013746_P001	AT1G49840.1	21798944
AT2G27480.1	Zm00001d016585_P002	AT1G49840.1	21798944
AT2G27480.1	Zm00001d022006_P001	AT1G49840.1	21798944
AT2G27480.1	Zm00001d030837_P001	AT1G49840.1	21798944
AT2G27480.1	Zm00001d047324_P001	AT1G49840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES14088	Sorghum	cytosol	82.49	78.52
Os08t0558100-01	Rice	cytosol	66.15	67.19
TraesCS7D01G133400.1	Wheat	cytosol	66.15	65.64
TraesCS7A01G134000.1	Wheat	cytosol	64.2	64.2
TraesCS7B01G035100.1	Wheat	cytosol	62.26	59.04
GSMUA_Achr3P22660_001	Banana	plastid	54.09	58.9
HORVU7Hr1G027810.6	Barley	cytosol	61.87	58.67
VIT_06s0080g00450.t01	Wine grape	plastid	50.58	57.78
KRH26648	Soybean	cytosol, plastid	45.91	55.4
KRH22671	Soybean	cytosol, plastid	45.91	54.13
Solyc11g068460.1.1	Tomato	cytosol, plastid	50.58	52.21
CDY31179	Canola	cytosol	38.91	44.84
CDX83268	Canola	cytosol	38.52	44.39
Bra000510.1-P	Field mustard	cytosol	38.13	43.95
AT2G27480.1	Thale cress	cytosol, nucleus, peroxisome	38.52	43.42
PGSC0003DMT400067730	Potato	cytosol, plastid	42.02	37.24
Zm00001d052458_P001	Maize	extracellular	42.02	36.49

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100273665	MapMan:35.1	ProteinID:AQK51638.1	EMBL:BT041600	EMBL:BT085425
UniProt:C4J3M8	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:IPR002048	PFAM:PF13202	PFAM:PF13405	ScanProsite:PS00018	PFscan:PS50222
PANTHER:PTHR10183	PANTHER:PTHR10183:SF372	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0001A4C00A	EnsemblPlantsGene:Zm00001d049940
EnsemblPlants:Zm00001d049940_P002	EnsemblPlants:Zm00001d049940_T002	SEG:seg	:	:	:

Description

Probable calcium-binding protein CML48

Coordinates

chr4:+:54279532..54282162

Molecular Weight (calculated)

27643.3 Da

IEP (calculated)

6.113

GRAVY (calculated)

-0.319

Length

257 amino acids

Sequence
(BLAST)

001: MSDYNRYGHS YSYGGGYGQG PAPSAPPAPH MPTATSAAPP SSSSYGAYAG YPPAYPPPPS QAAGGFGPAG SGYGFVPVAF PPGTHPDVER AFRAADRDCS
101: GAIDERELQG ALSSAYHRFS VRTVRLLMFL FNDPSSSTPS RMGPTQFVSL WDCLGQWRGI FDRYDRDRSG KIDSRELTEA LRSLGYAVPP SVIELLIANY
201: SNGVPSNGAL DFDNFVECGM IVKGLTEKFK EKDTRYTGSA TLTYDGFLSM VIPFIVP

Best Arabidopsis Sequence Match ( AT5G04170.1 )
(BLAST)

001: MSGYPPTSQG YGYGYGGGNQ PPPPQPPYSS GGNNPPYGSS TTSSPYAVPY GASKPQSSSS SAPTYGSSSY GAPPPSAPYA PSPGDYNKPP KEKPYGGGYG
101: APPPSGSSDY GSYGAGPRPS QPSGHGGGYG ATPPHGVSDY GSYGGAPPRP ASSGHGGGYG GYPPQASYGS PFASLIPSGF APGTDPNIVA CFQAADQDGS
201: GFIDDKELQG ALSSYQQRFS MRTVHLLMYL FTNSNAMKIG PKEFTALFYS LQNWRSIFER SDKDRSGRID VNELRDALLS LGFSVSPVVL DLLVSKFDKS
301: GGKNRAIEYD NFIECCLTVK GLTEKFKEKD TAYSGSATFN YESFMLTVLP FLIA

Arabidopsis Description

CML50Probable calcium-binding protein CML50 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.