Factsheet for Zm00001d013746_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005003_P002
Zm00001d006078_P001
Zm00001d008278_P001
Zm00001d010649_P001
Zm00001d012045_P001
Zm00001d015355_P001
Zm00001d018004_P002
Zm00001d021038_P001
Zm00001d028948_P001
Zm00001d031586_P001
Zm00001d038543_P004
Zm00001d038545_P001
Zm00001d041430_P001
Zm00001d042359_P001
Zm00001d043144_P001
Zm00001d044802_P001
Zm00001d047597_P001
Zm00001d052273_P004
Zm00001d052415_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G27690.1	Zm00001d005003_P002	AT2G41100.1	17360592
AT1G27690.1	Zm00001d008278_P001	AT2G41100.1	17360592
AT1G27690.1	Zm00001d010649_P001	AT2G41100.1	17360592
AT1G27690.1	Zm00001d028948_P001	AT2G41100.1	17360592
AT1G27690.1	Zm00001d038543_P004	AT2G41100.1	17360592
AT1G27690.1	Zm00001d038545_P001	AT2G41100.1	17360592
AT1G27690.1	Zm00001d041430_P001	AT2G41100.1	17360592
AT1G27690.1	Zm00001d043144_P001	AT2G41100.1	17360592
AT1G27690.1	Zm00001d047597_P001	AT2G41100.1	17360592
AT1G27690.1	Zm00001d052415_P001	AT2G41100.1	17360592
AT1G27690.1	Zm00001d006078_P001	AT3G07120.1	21798944
AT1G27690.1	Zm00001d012045_P001	AT3G07120.1	21798944
AT1G27690.1	Zm00001d021038_P001	AT3G07120.1	21798944
AT1G27690.1	Zm00001d031586_P001	AT3G07120.1	21798944
AT1G27690.1	Zm00001d042359_P001	AT3G07120.1	21798944
AT1G49840.1	Zm00001d015355_P001	AT1G21840.1	21798944
AT3G19540.1	Zm00001d018004_P002	AT5G62880.1	21798944
AT3G19540.1	Zm00001d044802_P001	AT5G62880.1	21798944
AT3G19540.1	Zm00001d052273_P004	AT5G62880.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER91248	Sorghum	cytosol	89.63	88.87
TraesCS4D01G076200.1	Wheat	cytosol, mitochondrion	79.91	80.96
TraesCS4B01G077800.1	Wheat	cytosol	79.05	80.09
TraesCS4A01G237300.1	Wheat	cytosol, mitochondrion	79.05	80.09
Os03t0606100-01	Rice	cytosol	74.73	78.64
Zm00001d030837_P001	Maize	cytosol, mitochondrion	74.08	71.76
VIT_03s0091g00410.t01	Wine grape	plastid	67.17	65.47
GSMUA_Achr7P00620_001	Banana	mitochondrion	57.45	65.36
KRG91072	Soybean	plastid	65.01	65.01
HORVU4Hr1G013190.8	Barley	mitochondrion	70.84	64.95
KRH35700	Soybean	plastid	64.58	64.72
PGSC0003DMT400066530	Potato	plastid	63.93	62.98
Solyc01g107350.2.1	Tomato	plastid	63.5	62.55
VIT_18s0001g09450.t01	Wine grape	plastid	62.85	62.05
CDY50147	Canola	mitochondrion	58.75	61.96
CDX95439	Canola	mitochondrion	58.1	61.84
PGSC0003DMT400055468	Potato	plastid	61.77	60.85
KRH05611	Soybean	plastid	61.56	59.87
KRH15430	Soybean	plastid	61.12	59.83
CDY67693	Canola	mitochondrion	58.1	59.25
Zm00001d047324_P001	Maize	cytosol	62.63	59.18
Zm00001d006749_P001	Maize	cytosol	67.17	59.13
Bra038214.1-P	Field mustard	mitochondrion, plastid	58.32	58.82
CDY16530	Canola	plastid	57.24	58.63
CDY46168	Canola	mitochondrion	57.67	58.55
Bra022430.1-P	Field mustard	mitochondrion, plastid	58.96	58.21
AT3G19540.1	Thale cress	plastid	60.91	58.14
CDY32838	Canola	plastid	56.59	57.58
Zm00001d016585_P002	Maize	extracellular, plasma membrane	31.32	57.31
Zm00001d022006_P001	Maize	cytosol, plastid	68.03	56.55
AT1G49840.1	Thale cress	plastid	58.53	54.86
Bra014219.1-P	Field mustard	plastid	57.67	54.71
AT1G27690.1	Thale cress	plastid	50.54	54.04
CDY03939	Canola	cytosol	13.61	53.39
Solyc04g078190.2.1	Tomato	nucleus, plastid	33.48	52.9
Zm00001d027816_P001	Maize	cytosol	38.01	48.75
CDY67976	Canola	mitochondrion, plastid	50.32	45.96
CDX90103	Canola	mitochondrion, plastid	50.11	45.76
Bra010924.1-P	Field mustard	mitochondrion, plastid	51.62	44.76
Zm00001d043364_P001	Maize	mitochondrion	11.23	42.98
Zm00001d047840_P001	Maize	cytosol, peroxisome, plastid	40.82	41.54
Zm00001d028565_P002	Maize	cytosol	40.82	41.09
Zm00001d012676_P001	Maize	cytosol	33.05	40.05
Zm00001d037792_P001	Maize	cytosol, nucleus, plastid	35.64	34.02

Protein Annotations

EnsemblPlants:Zm00001d013746_P001	EnsemblPlants:Zm00001d013746_T001	EnsemblPlantsGene:Zm00001d013746	EntrezGene:103626058	InterPro:DUF620	PANTHER:PTHR31300
PANTHER:PTHR31300:SF20	PFAM:PF04788	ProteinID:AQK64287.1	SEG:seg	UniParc:UPI000220F17A	UniProt:A0A1D6GLV0
MapMan:27.4.5.3	:	:	:	:	:

Description

No Description!

Coordinates

chr5:+:19171913..19174748

Molecular Weight (calculated)

49944.9 Da

IEP (calculated)

9.396

GRAVY (calculated)

-0.245

Length

463 amino acids

Sequence
(BLAST)

001: MERRHGFFAA LREEVARGLS PARARRKPDA TDLAAALSFT GVAGAGEMLA PLMEGPDPEP SDDGDGSGRR GAARGRKEGW GHWVRVQFAR APSSAVALRS
101: DIRMLLGVMA APLAPVRVCA AEPLPHLSVK DTPIETSSAQ YILQQYLAAS GGHKLLASLR STYAMGKVRM VATEFETAGR LTKNRSAGRG GEPGRFVLWQ
201: MAPEMWYIEL AVRGSKVHAG CNGKLVWRHT PWLGAHSAKG PVRPLRRALQ GLDPLTAASM FARARCIGER KVNGEDCFIL KLSTDPEILK ARSEGHAEII
301: RHVTFGYFSQ RTGLLVHIED SHLTRIQSAA GGDAVYWETT ISSSMEDYRP VDGIVVAHSG RSAVTLFRFG EVAMSHTKTR MEEVWSIEEV AFNVPGLSMD
401: CFIPPTDIKS GSVGEAMELA HGERSRAGPP PPPPGCRAKV AALGKAEEGK VAWGGGTVLE NQN

Best Arabidopsis Sequence Match ( AT3G19540.1 )
(BLAST)

001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV

Arabidopsis Description

AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.