Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d012045_P001 | Maize | cytosol, mitochondrion, nucleus | 54.9 | 56.19 |
| Os01t0917900-01 | Rice | nucleus | 57.19 | 55.91 |
| HORVU4Hr1G069780.1 | Barley | nucleus | 21.57 | 39.29 |
| HORVU5Hr1G123180.1 | Barley | cytosol, nucleus | 23.86 | 38.42 |
| HORVU1Hr1G049430.2 | Barley | cytosol, nucleus, plastid | 21.57 | 37.08 |
| Zm00001d021038_P001 | Maize | nucleus | 21.9 | 36.41 |
| TraesCS3D01G259900.1 | Wheat | nucleus | 31.7 | 35.79 |
| TraesCS3B01G459700.1 | Wheat | cytosol, mitochondrion, nucleus | 29.09 | 35.32 |
| TraesCS3D01G419000.1 | Wheat | cytosol, mitochondrion, nucleus | 28.43 | 34.94 |
| TraesCS3A01G423800.1 | Wheat | cytosol | 28.76 | 34.51 |
| TraesCS3A01G259800.1 | Wheat | nucleus | 30.72 | 34.43 |
| Solyc06g007880.1.1 | Tomato | nucleus | 20.91 | 34.41 |
| Bra015092.1-P | Field mustard | nucleus | 21.9 | 32.37 |
| HORVU3Hr1G093580.1 | Barley | plastid | 28.76 | 31.77 |
| GSMUA_Achr8P00880_001 | Banana | nucleus | 27.12 | 31.09 |
| PGSC0003DMT400003096 | Potato | nucleus | 20.26 | 31.0 |
| Zm00001d006078_P001 | Maize | nucleus | 19.28 | 30.73 |
| Bra001236.1-P | Field mustard | nucleus | 21.9 | 30.32 |
| CDY24647 | Canola | nucleus | 20.91 | 30.05 |
| Bra029623.1-P | Field mustard | nucleus | 20.91 | 29.91 |
| HORVU3Hr1G064710.1 | Barley | cytosol | 33.33 | 29.74 |
| CDY05318 | Canola | nucleus | 20.59 | 29.72 |
| CDX77379 | Canola | cytosol | 24.18 | 29.6 |
| VIT_00s0186g00090.t01 | Wine grape | cytosol, nucleus, plastid | 30.72 | 28.83 |
| AT3G25030.4 | Thale cress | cytosol | 23.53 | 28.8 |
| CDY69745 | Canola | cytosol | 22.88 | 28.57 |
| Zm00001d031586_P001 | Maize | cytosol | 22.88 | 28.0 |
| AT4G13100.2 | Thale cress | extracellular | 22.55 | 26.04 |
| KRH07558 | Soybean | nucleus | 21.9 | 25.57 |
| CDX74062 | Canola | cytosol, nucleus, plastid | 26.47 | 23.96 |
| Bra040362.1-P | Field mustard | nucleus | 25.82 | 22.83 |
| KRH66042 | Soybean | nucleus | 20.26 | 22.71 |
| AT3G07120.1 | Thale cress | nucleus | 24.18 | 20.56 |
Protein Annotations
| EMBL:BT062171 | EnsemblPlants:Zm00001d042359_P001 | EnsemblPlants:Zm00001d042359_T001 | EnsemblPlantsGene:Zm00001d042359 | EntrezGene:100381751 | Gene3D:3.30.40.10 |
| InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 |
| PFAM:PF13920 | PFscan:PS50089 | ProteinID:ONM35140.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI00019485DF | UniProt:C0HIL5 | MapMan:35.2 | : | : | : |
Description
RING/U-box superfamily protein
Coordinates
chr3:+:163195349..163196269
Molecular Weight (calculated)
33435.0 Da
IEP (calculated)
4.310
GRAVY (calculated)
-0.938
Length
306 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGGRPEMRR TMTLSEQLSS TPDPAIRDFL KIPQDADVGG ILHDEDSPSA VDAQGPRAGR TSGWKPLRDR LRLRRAAGAW QTPPNKPGAA AAHAPTNSGN
101: LSNRYNYNPG EAAAAFSRTF SRAPSLRAPS LRATPTFSRV ASTRLGPASS RSSSRRPATY DFRDVDERRH DADADDGGEE EDDEGEDDDD EGDEEDEKEE
201: APAAQMSLMA LLEQTDSQWD DDEDEEESGG GGGARKKGEG DDDEDDGEGR EEEMVHVCCV CMVRHKGAAF IPCGHTFCRL CSRELWVSRG NCPLCNGFIQ
301: EILDIF
101: LSNRYNYNPG EAAAAFSRTF SRAPSLRAPS LRATPTFSRV ASTRLGPASS RSSSRRPATY DFRDVDERRH DADADDGGEE EDDEGEDDDD EGDEEDEKEE
201: APAAQMSLMA LLEQTDSQWD DDEDEEESGG GGGARKKGEG DDDEDDGEGR EEEMVHVCCV CMVRHKGAAF IPCGHTFCRL CSRELWVSRG NCPLCNGFIQ
301: EILDIF
001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKQEAS SVEGRIRLGA
101: VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN
201: TTILEVLDLF
101: VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN
201: TTILEVLDLF
Arabidopsis Description
At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.