Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G259900.1 | Wheat | nucleus | 62.39 | 78.97 |
| TraesCS3A01G259800.1 | Wheat | nucleus | 61.81 | 77.66 |
| Os01t0917900-01 | Rice | nucleus | 38.19 | 41.85 |
| EES04107 | Sorghum | nucleus | 35.86 | 41.84 |
| Zm00001d012045_P001 | Maize | cytosol, mitochondrion, nucleus | 32.94 | 37.79 |
| Zm00001d042359_P001 | Maize | cytosol, mitochondrion, nucleus | 29.74 | 33.33 |
| HORVU3Hr1G093580.1 | Barley | plastid | 21.87 | 27.08 |
| GSMUA_Achr8P00880_001 | Banana | nucleus | 16.62 | 21.35 |
| PGSC0003DMT400003096 | Potato | nucleus | 11.95 | 20.5 |
| CDY24647 | Canola | nucleus | 12.54 | 20.19 |
| Bra029623.1-P | Field mustard | nucleus | 12.24 | 19.63 |
| HORVU5Hr1G075810.1 | Barley | mitochondrion, nucleus | 10.79 | 19.47 |
| Solyc06g007880.1.1 | Tomato | nucleus | 10.5 | 19.35 |
| VIT_00s0186g00090.t01 | Wine grape | cytosol, nucleus, plastid | 17.49 | 18.4 |
| CDY05318 | Canola | nucleus | 11.37 | 18.4 |
| CDX77379 | Canola | cytosol | 12.24 | 16.8 |
| Bra040362.1-P | Field mustard | nucleus | 16.91 | 16.76 |
| Bra015092.1-P | Field mustard | nucleus | 9.62 | 15.94 |
| AT4G13100.2 | Thale cress | extracellular | 12.24 | 15.85 |
| Bra001236.1-P | Field mustard | nucleus | 10.2 | 15.84 |
| AT3G25030.4 | Thale cress | cytosol | 11.37 | 15.6 |
| HORVU4Hr1G069780.1 | Barley | nucleus | 7.58 | 15.48 |
| CDX74062 | Canola | cytosol, nucleus, plastid | 15.16 | 15.38 |
| HORVU5Hr1G123180.1 | Barley | cytosol, nucleus | 8.45 | 15.26 |
| HORVU7Hr1G053470.4 | Barley | cytosol, mitochondrion, plastid | 11.95 | 15.24 |
| HORVU1Hr1G049430.2 | Barley | cytosol, nucleus, plastid | 7.87 | 15.17 |
| AT3G07120.1 | Thale cress | nucleus | 15.74 | 15.0 |
| KRH07558 | Soybean | nucleus | 11.37 | 14.89 |
| CDY69745 | Canola | cytosol | 10.5 | 14.69 |
| KRH66042 | Soybean | nucleus | 11.66 | 14.65 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G064710.1 | EnsemblPlantsGene:HORVU3Hr1G064710 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 | PFAM:PF13920 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000B46FAD8 | UniProt:A0A287LD72 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr3H:-:493702772..493704248
Molecular Weight (calculated)
37254.0 Da
IEP (calculated)
4.837
GRAVY (calculated)
-0.695
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: PQIGVQKARE RGDPLDLLSS SPFLLPPSLS RPYIRCNLDP FHHPSALPPS PRQGYAQSFV PRSGGVKGAM ERRPELRRSM TLSEQLSTPD PAIRDFLRIP
101: ADNSHLSADA GRTAADGGGS GGMVNWKPLR DRLRLRRSVN AWSSPSEKPS TTDSAGSLKN SGSGSHRSNK YIYAQGEATA AFSRTSSLRQ TPTFSRAAST
201: RVCSAATIGR ADRSATVVDD EGSEDESEHD EDEEEGKEEA PAAQMSLMAL LEQTDSWDED EDEDEGAGGG ASKNAHADDD EDDGEGREEE MVHVCCVCMV
301: RHKGAAFIPC GHTFCRLCSR ELWVSRGNCP LCNGFIQEIL DIF
101: ADNSHLSADA GRTAADGGGS GGMVNWKPLR DRLRLRRSVN AWSSPSEKPS TTDSAGSLKN SGSGSHRSNK YIYAQGEATA AFSRTSSLRQ TPTFSRAAST
201: RVCSAATIGR ADRSATVVDD EGSEDESEHD EDEEEGKEEA PAAQMSLMAL LEQTDSWDED EDEDEGAGGG ASKNAHADDD EDDGEGREEE MVHVCCVCMV
301: RHKGAAFIPC GHTFCRLCSR ELWVSRGNCP LCNGFIQEIL DIF
001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKRNGS VWISSNSIPS
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF
Arabidopsis Description
At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.