Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES04107 | Sorghum | nucleus | 59.11 | 62.93 |
| Zm00001d012045_P001 | Maize | cytosol, mitochondrion, nucleus | 56.23 | 58.86 |
| Zm00001d042359_P001 | Maize | cytosol, mitochondrion, nucleus | 55.91 | 57.19 |
| TraesCS3D01G419000.1 | Wheat | cytosol, mitochondrion, nucleus | 37.38 | 46.99 |
| TraesCS3B01G459700.1 | Wheat | cytosol, mitochondrion, nucleus | 35.78 | 44.44 |
| TraesCS3D01G259900.1 | Wheat | nucleus | 38.34 | 44.28 |
| TraesCS3A01G259800.1 | Wheat | nucleus | 38.02 | 43.59 |
| HORVU3Hr1G093580.1 | Barley | plastid | 35.14 | 39.71 |
| TraesCS3A01G423800.1 | Wheat | cytosol | 32.27 | 39.61 |
| HORVU1Hr1G049430.2 | Barley | cytosol, nucleus, plastid | 21.73 | 38.2 |
| HORVU3Hr1G064710.1 | Barley | cytosol | 41.85 | 38.19 |
| HORVU4Hr1G069780.1 | Barley | nucleus | 20.13 | 37.5 |
| HORVU5Hr1G123180.1 | Barley | cytosol, nucleus | 22.36 | 36.84 |
| PGSC0003DMT400003096 | Potato | nucleus | 21.09 | 33.0 |
| Solyc06g007880.1.1 | Tomato | nucleus | 19.17 | 32.26 |
| Bra015092.1-P | Field mustard | nucleus | 21.09 | 31.88 |
| GSMUA_Achr8P00880_001 | Banana | nucleus | 26.84 | 31.46 |
| Os09t0505000-00 | Rice | nucleus | 21.41 | 31.31 |
| CDX77379 | Canola | cytosol | 24.6 | 30.8 |
| CDY05318 | Canola | nucleus | 19.81 | 29.25 |
| CDY69745 | Canola | cytosol | 22.68 | 28.98 |
| CDY24647 | Canola | nucleus | 19.49 | 28.64 |
| Bra029623.1-P | Field mustard | nucleus | 19.49 | 28.5 |
| AT3G25030.4 | Thale cress | cytosol | 22.68 | 28.4 |
| VIT_00s0186g00090.t01 | Wine grape | cytosol, nucleus, plastid | 29.39 | 28.22 |
| AT4G13100.2 | Thale cress | extracellular | 23.0 | 27.17 |
| Bra001236.1-P | Field mustard | nucleus | 17.89 | 25.34 |
| KRH07558 | Soybean | nucleus | 21.09 | 25.19 |
| KRH66042 | Soybean | nucleus | 20.77 | 23.81 |
| Bra040362.1-P | Field mustard | nucleus | 23.64 | 21.39 |
| CDX74062 | Canola | cytosol, nucleus, plastid | 23.0 | 21.3 |
| AT3G07120.1 | Thale cress | nucleus | 24.28 | 21.11 |
Protein Annotations
| EMBL:AK109460 | EnsemblPlants:Os01t0917900-01 | EnsemblPlantsGene:Os01g0917900 | EntrezGene:4324357 | Gene3D:3.30.40.10 | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 | PFAM:PF13920 |
| PFscan:PS50089 | ProteinID:BAB86148.1 | ProteinID:BAF07118.1 | ProteinID:BAS75903.1 | RefSeq:XP_015635318.1 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00000AA60E | UniProt:Q8RZV3 | MapMan:35.2 | : |
Description
Zinc finger, RING/FYVE/PHD-type domain containing protein. (Os01t0917900-01)
Coordinates
chr1:-:40036041..40037441
Molecular Weight (calculated)
32526.9 Da
IEP (calculated)
4.546
GRAVY (calculated)
-0.776
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MERRPELRRT MTLSEQLSAP DQAIRDFLKI PHDGLGGGDG EGGRIPAAAG ASGGGGGVGG MINWKPLRDR LRLRRAASAW MSASPKPAAS NSGGGGGGGA
101: TLSSSNSGSN HSNKYNYSPG EAAAAFSRTF SRTRSLRPTP TFSRATSTRL GATAFSSGSR RAAVDGGGHA NEDDDEDHTD DDDDDDEEEQ GKDDAPAAQM
201: SLMALLEQSD SQWDSEDEDD QGHGGGGGGG GNGGGGGGGG ARKNGDGDDD EDDGEGREEE MVHVCCVCMV RHKGAAFIPC GHTFCRLCSR ELWVSRGNCP
301: LCNGFIQEIL DIF
101: TLSSSNSGSN HSNKYNYSPG EAAAAFSRTF SRTRSLRPTP TFSRATSTRL GATAFSSGSR RAAVDGGGHA NEDDDEDHTD DDDDDDEEEQ GKDDAPAAQM
201: SLMALLEQSD SQWDSEDEDD QGHGGGGGGG GNGGGGGGGG ARKNGDGDDD EDDGEGREEE MVHVCCVCMV RHKGAAFIPC GHTFCRLCSR ELWVSRGNCP
301: LCNGFIQEIL DIF
001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKRNGS VWISSNSIPS
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF
Arabidopsis Description
At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.