Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 3
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P08650_001 | Banana | nucleus | 20.75 | 57.89 |
| AT3G25030.4 | Thale cress | cytosol | 43.77 | 46.4 |
| Bra015092.1-P | Field mustard | nucleus | 35.85 | 45.89 |
| CDX77379 | Canola | cytosol | 42.64 | 45.2 |
| CDY69745 | Canola | cytosol | 37.74 | 40.82 |
| Zm00001d021038_P001 | Maize | nucleus | 23.77 | 34.24 |
| TraesCS5A01G283800.1 | Wheat | mitochondrion, nucleus, peroxisome | 24.53 | 34.21 |
| TraesCS5B01G282300.1 | Wheat | cytosol, mitochondrion, nucleus | 24.53 | 33.16 |
| HORVU5Hr1G075810.1 | Barley | mitochondrion, nucleus | 23.77 | 33.16 |
| OQU89743 | Sorghum | mitochondrion, nucleus, plastid | 24.15 | 30.77 |
| Solyc09g059990.1.1 | Tomato | nucleus | 28.68 | 30.77 |
| TraesCS5D01G291000.1 | Wheat | cytosol, mitochondrion, nucleus | 23.02 | 30.5 |
| GSMUA_Achr8P00880_001 | Banana | nucleus | 30.19 | 29.96 |
| HORVU1Hr1G049430.2 | Barley | cytosol, nucleus, plastid | 20.0 | 29.78 |
| HORVU5Hr1G123180.1 | Barley | cytosol, nucleus | 21.13 | 29.47 |
| PGSC0003DMT400077589 | Potato | nucleus | 28.3 | 29.41 |
| Zm00001d006078_P001 | Maize | nucleus | 21.13 | 29.17 |
| Os09t0505000-00 | Rice | nucleus | 23.4 | 28.97 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 25.66 | 28.94 |
| HORVU4Hr1G069780.1 | Barley | nucleus | 18.11 | 28.57 |
| GSMUA_AchrUn_... | Banana | nucleus | 28.3 | 28.2 |
| Zm00001d031586_P001 | Maize | cytosol | 26.04 | 27.6 |
| TraesCS7D01G258600.1 | Wheat | nucleus | 27.17 | 27.17 |
| TraesCS7B01G154600.1 | Wheat | nucleus | 26.79 | 27.0 |
| TraesCS7A01G257600.1 | Wheat | nucleus | 26.79 | 26.79 |
| TraesCS3A01G423800.1 | Wheat | cytosol | 25.66 | 26.67 |
| TraesCS3D01G419000.1 | Wheat | cytosol, mitochondrion, nucleus | 24.91 | 26.51 |
| HORVU3Hr1G093580.1 | Barley | plastid | 26.04 | 24.91 |
| EES04107 | Sorghum | nucleus | 27.17 | 24.49 |
| GSMUA_Achr5P25250_001 | Banana | cytosol | 24.91 | 24.44 |
| TraesCS3B01G459700.1 | Wheat | cytosol, mitochondrion, nucleus | 23.02 | 24.21 |
| Zm00001d012045_P001 | Maize | cytosol, mitochondrion, nucleus | 26.04 | 23.08 |
| Os01t0917900-01 | Rice | nucleus | 27.17 | 23.0 |
| Zm00001d042359_P001 | Maize | cytosol, mitochondrion, nucleus | 26.04 | 22.55 |
| HORVU7Hr1G053470.4 | Barley | cytosol, mitochondrion, plastid | 22.26 | 21.93 |
| AT3G07120.1 | Thale cress | nucleus | 27.55 | 20.28 |
| TraesCS3D01G259900.1 | Wheat | nucleus | 14.34 | 14.02 |
| OQU80845 | Sorghum | mitochondrion | 24.53 | 13.57 |
| TraesCS3A01G259800.1 | Wheat | nucleus | 13.96 | 13.55 |
| HORVU3Hr1G064710.1 | Barley | cytosol | 15.85 | 12.24 |
| AT4G22250.1 | Thale cress | cytosol | 9.81 | 12.15 |
| AT1G62370.1 | Thale cress | cytosol | 8.68 | 11.27 |
| AT4G03965.1 | Thale cress | cytosol | 7.92 | 10.05 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:826924 | ProteinID:AEE83232.1 | ArrayExpress:AT4G13100 | EnsemblPlantsGene:AT4G13100 |
| RefSeq:AT4G13100 | TAIR:AT4G13100 | RefSeq:AT4G13100-TAIR-G | EnsemblPlants:AT4G13100.2 | TAIR:AT4G13100.2 | Unigene:At.33415 |
| UniProt:F4JS86 | InterPro:IPR001841 | InterPro:IPR013083 | RefSeq:NP_849372.2 | PFAM:PF13920 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50089 |
| PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000034F1F3 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JS86]
Coordinates
chr4:-:7636438..7639037
Molecular Weight (calculated)
29371.1 Da
IEP (calculated)
6.055
GRAVY (calculated)
-0.304
Length
265 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMPFALEIC SAAIELRILV QIEGKLSAKV ENGRSSVTLE DILMAETSSF RSLTTPTTPV RNHSSSSLLD VMRRERRRDK TAWKSLRDKL RLKRTATGWI
101: SSNPIPTLDN HILTPDNDSH RFNRLGFLLT NSETNRSSRD VSDAAEEAAE REGRLRLGTV LAAEREPPRM SLMELLEDND GHMYELSARD EVEVEGRDGC
201: DGGGEAVAVT GAAELGCCVC MVRSKGAAFI PCGHTFCRLC SRELWVQRGN CPLCNTAILQ VLDIF
101: SSNPIPTLDN HILTPDNDSH RFNRLGFLLT NSETNRSSRD VSDAAEEAAE REGRLRLGTV LAAEREPPRM SLMELLEDND GHMYELSARD EVEVEGRDGC
201: DGGGEAVAVT GAAELGCCVC MVRSKGAAFI PCGHTFCRLC SRELWVQRGN CPLCNTAILQ VLDIF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.