Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
- plastid 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P08650_001 | Banana | nucleus | 22.98 | 56.84 |
| GSMUA_AchrUn_... | Banana | nucleus | 38.72 | 34.21 |
| GSMUA_Achr5P25250_001 | Banana | cytosol | 38.72 | 33.7 |
| Solyc06g007880.1.1 | Tomato | nucleus | 24.68 | 31.18 |
| Bra015092.1-P | Field mustard | nucleus | 25.96 | 29.47 |
| PGSC0003DMT400003096 | Potato | nucleus | 24.26 | 28.5 |
| GSMUA_Achr8P00880_001 | Banana | nucleus | 32.34 | 28.46 |
| CDX77379 | Canola | cytosol | 29.36 | 27.6 |
| CDY69745 | Canola | cytosol | 28.09 | 26.94 |
| AT4G13100.2 | Thale cress | extracellular | 28.94 | 25.66 |
| KRH66042 | Soybean | nucleus | 29.79 | 25.64 |
| KRH07558 | Soybean | nucleus | 28.51 | 25.57 |
| CDY24647 | Canola | nucleus | 22.98 | 25.35 |
| AT3G25030.4 | Thale cress | cytosol | 26.38 | 24.8 |
| Bra029623.1-P | Field mustard | nucleus | 22.55 | 24.77 |
| CDY05318 | Canola | nucleus | 22.13 | 24.53 |
| Bra001236.1-P | Field mustard | nucleus | 22.98 | 24.43 |
| VIT_00s0186g00090.t01 | Wine grape | cytosol, nucleus, plastid | 33.19 | 23.93 |
| CDX74062 | Canola | cytosol, nucleus, plastid | 24.26 | 16.86 |
| GSMUA_Achr3P12970_001 | Banana | cytosol | 11.91 | 16.18 |
| Bra040362.1-P | Field mustard | nucleus | 23.83 | 16.18 |
| AT3G07120.1 | Thale cress | nucleus | 23.4 | 15.28 |
| GSMUA_Achr1P18240_001 | Banana | nucleus | 10.64 | 14.2 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P08620_001 | EnsemblPlants:GSMUA_Achr11T08620_001 | EnsemblPlantsGene:GSMUA_Achr11G08620_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF21 | PFAM:PF13920 | PFscan:PS50089 |
| SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002954898 | UniProt:M0RQJ2 | MapMan:35.2 |
Description
Putative zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G08620_001]
Coordinates
chr11:-:6678607..6679791
Molecular Weight (calculated)
24996.0 Da
IEP (calculated)
5.119
GRAVY (calculated)
0.020
Length
235 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGRGVRRSV TLSEQLAVVN CCNLRDLLKV QDEDEARPSI AVAACGKREA SSAAGGAGGG RTLLDIMREE QETSGVVVGG NAGNGINWKS FKDRIRLAWA
101: ASSGRPNQMP YPALVVPVRP NAVLAGNSEI PPARVSLMAL LEQTDRLWSS GGEGSSPVAA ALAAALVAEE DDEWALEDVG SGTMYVCCVC MVRHKGAAFI
201: PCGHTFCRLC SRELWVNRGS CPLCNGYILE ILDIF
101: ASSGRPNQMP YPALVVPVRP NAVLAGNSEI PPARVSLMAL LEQTDRLWSS GGEGSSPVAA ALAAALVAEE DDEWALEDVG SGTMYVCCVC MVRHKGAAFI
201: PCGHTFCRLC SRELWVNRGS CPLCNGYILE ILDIF
001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKQEAS SVEGRIRLGA
101: VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN
201: TTILEVLDLF
101: VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN
201: TTILEVLDLF
Arabidopsis Description
At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.