Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77379 | Canola | cytosol | 60.8 | 60.8 |
| CDY69745 | Canola | cytosol | 58.0 | 59.18 |
| Bra015092.1-P | Field mustard | nucleus | 48.0 | 57.97 |
| GSMUA_Achr8P08650_001 | Banana | nucleus | 20.8 | 54.74 |
| AT4G13100.2 | Thale cress | extracellular | 46.4 | 43.77 |
| PGSC0003DMT400077589 | Potato | nucleus | 34.8 | 34.12 |
| Solyc09g059990.1.1 | Tomato | nucleus | 33.6 | 34.01 |
| TraesCS5A01G283800.1 | Wheat | mitochondrion, nucleus, peroxisome | 25.2 | 33.16 |
| Zm00001d021038_P001 | Maize | nucleus | 24.4 | 33.15 |
| HORVU1Hr1G049430.2 | Barley | cytosol, nucleus, plastid | 22.8 | 32.02 |
| TraesCS5B01G282300.1 | Wheat | cytosol, mitochondrion, nucleus | 24.8 | 31.63 |
| HORVU5Hr1G075810.1 | Barley | mitochondrion, nucleus | 24.0 | 31.58 |
| HORVU5Hr1G123180.1 | Barley | cytosol, nucleus | 24.0 | 31.58 |
| Zm00001d006078_P001 | Maize | nucleus | 24.0 | 31.25 |
| HORVU4Hr1G069780.1 | Barley | nucleus | 20.8 | 30.95 |
| GSMUA_Achr8P00880_001 | Banana | nucleus | 32.8 | 30.71 |
| OQU89743 | Sorghum | mitochondrion, nucleus, plastid | 24.4 | 29.33 |
| GSMUA_AchrUn_... | Banana | nucleus | 31.2 | 29.32 |
| TraesCS5D01G291000.1 | Wheat | cytosol, mitochondrion, nucleus | 23.2 | 29.0 |
| Os09t0505000-00 | Rice | nucleus | 23.6 | 27.57 |
| TraesCS3D01G419000.1 | Wheat | cytosol, mitochondrion, nucleus | 26.4 | 26.51 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 24.8 | 26.38 |
| TraesCS3A01G423800.1 | Wheat | cytosol | 26.4 | 25.88 |
| TraesCS3B01G459700.1 | Wheat | cytosol, mitochondrion, nucleus | 26.0 | 25.79 |
| GSMUA_Achr5P25250_001 | Banana | cytosol | 27.6 | 25.56 |
| TraesCS7B01G154600.1 | Wheat | nucleus | 26.4 | 25.1 |
| Zm00001d031586_P001 | Maize | cytosol | 24.4 | 24.4 |
| HORVU3Hr1G093580.1 | Barley | plastid | 26.4 | 23.83 |
| TraesCS7D01G258600.1 | Wheat | nucleus | 25.2 | 23.77 |
| Zm00001d042359_P001 | Maize | cytosol, mitochondrion, nucleus | 28.8 | 23.53 |
| HORVU7Hr1G053470.4 | Barley | cytosol, mitochondrion, plastid | 25.2 | 23.42 |
| TraesCS7A01G257600.1 | Wheat | nucleus | 24.8 | 23.4 |
| Os01t0917900-01 | Rice | nucleus | 28.4 | 22.68 |
| Zm00001d012045_P001 | Maize | cytosol, mitochondrion, nucleus | 26.8 | 22.41 |
| EES04107 | Sorghum | nucleus | 25.6 | 21.77 |
| AT3G07120.1 | Thale cress | nucleus | 29.2 | 20.28 |
| TraesCS3D01G259900.1 | Wheat | nucleus | 17.2 | 15.87 |
| TraesCS3A01G259800.1 | Wheat | nucleus | 16.8 | 15.38 |
| AT1G62370.1 | Thale cress | cytosol | 11.6 | 14.22 |
| AT4G22250.1 | Thale cress | cytosol | 11.6 | 13.55 |
| AT4G03965.1 | Thale cress | cytosol | 11.2 | 13.4 |
| OQU80845 | Sorghum | mitochondrion | 25.6 | 13.36 |
| HORVU3Hr1G064710.1 | Barley | cytosol | 15.6 | 11.37 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EntrezGene:822094 | ProteinID:AEE76969.1 | ProteinID:AEE76970.1 | ProteinID:ANM65519.1 |
| ArrayExpress:AT3G25030 | EnsemblPlantsGene:AT3G25030 | RefSeq:AT3G25030 | TAIR:AT3G25030 | RefSeq:AT3G25030-TAIR-G | EnsemblPlants:AT3G25030.4 |
| Unigene:At.49651 | ProteinID:BAB01888.1 | EMBL:BT014945 | EMBL:BT015397 | InterPro:IPR001841 | InterPro:IPR013083 |
| RefSeq:NP_001030762.1 | RefSeq:NP_001327479.1 | RefSeq:NP_189139.1 | PFAM:PF13920 | PFscan:PS50089 | PANTHER:PTHR12183 |
| PANTHER:PTHR12183:SF20 | UniProt:Q9LJR9 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000009E43D | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : | : |
Description
At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
Coordinates
chr3:+:9122197..9123512
Molecular Weight (calculated)
27834.3 Da
IEP (calculated)
5.245
GRAVY (calculated)
-0.330
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKRNGS VWISSNSIPS
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.