Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- nucleus 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra015092.1-P | Field mustard | nucleus | 55.79 | 25.6 |
| Solyc06g007880.1.1 | Tomato | nucleus | 49.47 | 25.27 |
| PGSC0003DMT400003096 | Potato | nucleus | 51.58 | 24.5 |
| GSMUA_Achr8P00880_001 | Banana | nucleus | 67.37 | 23.97 |
| GSMUA_AchrUn_... | Banana | nucleus | 66.32 | 23.68 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 56.84 | 22.98 |
| CDX77379 | Canola | cytosol | 55.79 | 21.2 |
| CDY69745 | Canola | cytosol | 53.68 | 20.82 |
| AT3G25030.4 | Thale cress | cytosol | 54.74 | 20.8 |
| AT4G13100.2 | Thale cress | extracellular | 57.89 | 20.75 |
| GSMUA_Achr5P25250_001 | Banana | cytosol | 58.95 | 20.74 |
| KRH07558 | Soybean | nucleus | 56.84 | 20.61 |
| CDY24647 | Canola | nucleus | 42.11 | 18.78 |
| Bra029623.1-P | Field mustard | nucleus | 42.11 | 18.69 |
| KRH66042 | Soybean | nucleus | 53.68 | 18.68 |
| CDY05318 | Canola | nucleus | 41.05 | 18.4 |
| VIT_00s0186g00090.t01 | Wine grape | cytosol, nucleus, plastid | 62.11 | 18.1 |
| Bra001236.1-P | Field mustard | nucleus | 37.89 | 16.29 |
| Bra040362.1-P | Field mustard | nucleus | 45.26 | 12.43 |
| AT3G07120.1 | Thale cress | nucleus | 45.26 | 11.94 |
| CDX74062 | Canola | cytosol, nucleus, plastid | 40.0 | 11.24 |
| GSMUA_Achr1P18240_001 | Banana | nucleus | 13.68 | 7.39 |
| GSMUA_Achr3P12970_001 | Banana | cytosol | 12.63 | 6.94 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P08650_001 | EnsemblPlants:GSMUA_Achr8T08650_001 | EnsemblPlantsGene:GSMUA_Achr8G08650_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 | PFAM:PF13920 |
| PFscan:PS50089 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000295E5BA | UniProt:M0TNR8 |
| MapMan:35.2 | : | : | : | : | : |
Description
zinc finger, C3HC4 type family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G08650_001]
Coordinates
chr8:+:5822580..5822867
Molecular Weight (calculated)
10694.6 Da
IEP (calculated)
3.840
GRAVY (calculated)
-0.268
Length
95 amino acids
Sequence
(BLAST)
(BLAST)
1: MALLEQTDMQ WGGSEEELEA EEEEEEEEEE VAQDKPDGGG DGMLYVCCVC MVRHKGAAFI PCGHTFCRLC SRELWVSRGN CPLCNGYILE ILDIF
001: MIQMDGGDRL RVTLLDRMST VENGRSSVTL EDILMAETSS FRSLTTPTTP VRNHSSSSLL DVMRRERRRD KTAWKSLRDK LRLKRTATGW ISSNPIPTLD
101: NHILTPDNDS HRFNRLGFLL TNSETNRSSR DVSDAAEEAA EREGRLRLGT VLAAEREPPR MSLMELLEDN DGHMYELSAR DEVEVEGRDG CDGGGEAVAV
201: TGAAELGCCV CMVRSKGAAF IPCGHTFCRL CSRELWVQRG NCPLCNTAIL QVLDIF
101: NHILTPDNDS HRFNRLGFLL TNSETNRSSR DVSDAAEEAA EREGRLRLGT VLAAEREPPR MSLMELLEDN DGHMYELSAR DEVEVEGRDG CDGGGEAVAV
201: TGAAELGCCV CMVRSKGAAF IPCGHTFCRL CSRELWVQRG NCPLCNTAIL QVLDIF
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JS86]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.