Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra029623.1-P | Field mustard | nucleus | 67.42 | 69.63 |
| CDX74062 | Canola | cytosol, nucleus, plastid | 93.21 | 60.95 |
| Bra040362.1-P | Field mustard | nucleus | 69.23 | 44.22 |
| AT3G07120.1 | Thale cress | nucleus | 66.97 | 41.11 |
| GSMUA_Achr8P08650_001 | Banana | nucleus | 16.29 | 37.89 |
| HORVU4Hr1G069780.1 | Barley | nucleus | 23.08 | 30.36 |
| HORVU1Hr1G049430.2 | Barley | cytosol, nucleus, plastid | 22.62 | 28.09 |
| Zm00001d021038_P001 | Maize | nucleus | 22.17 | 26.63 |
| HORVU5Hr1G123180.1 | Barley | cytosol, nucleus | 22.62 | 26.32 |
| Bra015092.1-P | Field mustard | nucleus | 23.98 | 25.6 |
| TraesCS5D01G291000.1 | Wheat | cytosol, mitochondrion, nucleus | 22.17 | 24.5 |
| Zm00001d006078_P001 | Maize | nucleus | 21.27 | 24.48 |
| HORVU5Hr1G075810.1 | Barley | mitochondrion, nucleus | 20.81 | 24.21 |
| OQU89743 | Sorghum | mitochondrion, nucleus, plastid | 22.17 | 23.56 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 24.43 | 22.98 |
| KRG99707 | Soybean | nucleus | 36.2 | 22.41 |
| TraesCS5A01G283800.1 | Wheat | mitochondrion, nucleus, peroxisome | 19.0 | 22.11 |
| TraesCS3D01G419000.1 | Wheat | cytosol, mitochondrion, nucleus | 24.89 | 22.09 |
| VIT_00s0186g00090.t01 | Wine grape | cytosol, nucleus, plastid | 32.58 | 22.09 |
| TraesCS5B01G282300.1 | Wheat | cytosol, mitochondrion, nucleus | 19.46 | 21.94 |
| Zm00001d042359_P001 | Maize | cytosol, mitochondrion, nucleus | 30.32 | 21.9 |
| EES04107 | Sorghum | nucleus | 28.96 | 21.77 |
| GSMUA_Achr8P00880_001 | Banana | nucleus | 26.24 | 21.72 |
| KRH46683 | Soybean | nucleus | 34.84 | 21.69 |
| TraesCS3A01G423800.1 | Wheat | cytosol | 24.43 | 21.18 |
| GSMUA_AchrUn_... | Banana | nucleus | 24.89 | 20.68 |
| TraesCS3B01G459700.1 | Wheat | cytosol, mitochondrion, nucleus | 23.53 | 20.63 |
| Os09t0505000-00 | Rice | nucleus | 19.91 | 20.56 |
| Zm00001d031586_P001 | Maize | cytosol | 22.62 | 20.0 |
| GSMUA_Achr5P25250_001 | Banana | cytosol | 24.43 | 20.0 |
| Zm00001d012045_P001 | Maize | cytosol, mitochondrion, nucleus | 26.24 | 19.4 |
| TraesCS7A01G257600.1 | Wheat | nucleus | 21.72 | 18.11 |
| Os01t0917900-01 | Rice | nucleus | 25.34 | 17.89 |
| HORVU3Hr1G093580.1 | Barley | plastid | 22.17 | 17.69 |
| TraesCS7D01G258600.1 | Wheat | nucleus | 20.81 | 17.36 |
| TraesCS7B01G154600.1 | Wheat | nucleus | 20.36 | 17.11 |
| HORVU7Hr1G053470.4 | Barley | cytosol, mitochondrion, plastid | 19.91 | 16.36 |
| TraesCS3D01G259900.1 | Wheat | nucleus | 18.55 | 15.13 |
| TraesCS3A01G259800.1 | Wheat | nucleus | 18.55 | 15.02 |
| OQU80845 | Sorghum | mitochondrion | 25.34 | 11.69 |
| HORVU3Hr1G064710.1 | Barley | cytosol | 15.84 | 10.2 |
| Bra034501.1-P | Field mustard | cytosol | 6.33 | 6.64 |
| Bra019391.1-P | Field mustard | nucleus | 5.88 | 6.6 |
| Bra013603.1-P | Field mustard | cytosol | 5.88 | 6.4 |
| Bra000784.1-P | Field mustard | nucleus | 4.98 | 5.45 |
Protein Annotations
| EnsemblPlants:Bra001236.1 | EnsemblPlants:Bra001236.1-P | EnsemblPlantsGene:Bra001236 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 | PFAM:PF13920 |
| PFscan:PS50089 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000254045F | UniProt:M4CAK7 |
| MapMan:35.2 | : | : | : | : | : |
Description
AT3G07120 (E=5e-034) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrA03:+:15456996..15457661
Molecular Weight (calculated)
24298.5 Da
IEP (calculated)
3.927
GRAVY (calculated)
-0.893
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDPPGSSGR GMFTRGSSMR VGSGKTPENN FADVSIPGDG PPFKPQLSRH DSVRDHGDGD DDKIRRHPVV KFVDERQMSA REAVAAQEAA EAEAESDDDE
101: EEEDDGSGEA EEEEASSAPK QTMSLMDLLE ETDRQMGLTG ARYAMDDGED EYEEDEDEEE EEEEEEDGGE VSCCVCQVRI KGATFTSCGH TFCKLCSKEL
201: MAQKGHCPVC TTFVLEFLEI F
101: EEEDDGSGEA EEEEASSAPK QTMSLMDLLE ETDRQMGLTG ARYAMDDGED EYEEDEDEEE EEEEEEDGGE VSCCVCQVRI KGATFTSCGH TFCKLCSKEL
201: MAQKGHCPVC TTFVLEFLEI F
001: MSALKSRSNS LAGLSLDAVL GGEILIEPPS LPSPPPLPSK SLVPHRPTSQ TLFDIIREEY AKEGHKDRTT WQIFREKLRL KRTGSAWTSS LHIPASDILI
101: PNPKHIGTAF RSHSAGLNIR DLVHAIPMSD PPGSSGRAMF TRGSSMRVGS SKNPDDSPDI SVLEDGPPSR SFKPQLSRHD SVRDHSEGEE NNRRRHPIVT
201: FVEERQMSAR EAVAAQEAAE AEAAAAGGSE DEDDDDEEDD SGETEEMKSS SASEPKQTMS LMDLLEETDR QMGLTGSRYA MDEDEEYEED EEDENNEEEG
301: DSHGGGEGEL SCCVCMVKIK GASFTPCGHT FCKLCSKELM AQKGHCPVCS SFVLEFLEIF
101: PNPKHIGTAF RSHSAGLNIR DLVHAIPMSD PPGSSGRAMF TRGSSMRVGS SKNPDDSPDI SVLEDGPPSR SFKPQLSRHD SVRDHSEGEE NNRRRHPIVT
201: FVEERQMSAR EAVAAQEAAE AEAAAAGGSE DEDDDDEEDD SGETEEMKSS SASEPKQTMS LMDLLEETDR QMGLTGSRYA MDEDEEYEED EEDENNEEEG
301: DSHGGGEGEL SCCVCMVKIK GASFTPCGHT FCKLCSKELM AQKGHCPVCS SFVLEFLEIF
Arabidopsis Description
At3g07120 [Source:UniProtKB/TrEMBL;Acc:Q9SFU2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.