Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 1
- cytosol 1
- nucleus 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS3D01G419000.1 | Wheat | cytosol, mitochondrion, nucleus | 65.7 | 73.09 |
TraesCS3B01G459700.1 | Wheat | cytosol, mitochondrion, nucleus | 60.29 | 66.27 |
TraesCS3A01G423800.1 | Wheat | cytosol | 50.54 | 54.9 |
HORVU4Hr1G069780.1 | Barley | nucleus | 32.85 | 54.17 |
HORVU5Hr1G123180.1 | Barley | cytosol, nucleus | 34.66 | 50.53 |
HORVU1Hr1G049430.2 | Barley | cytosol, nucleus, plastid | 32.13 | 50.0 |
EES04107 | Sorghum | nucleus | 39.35 | 37.07 |
Zm00001d012045_P001 | Maize | cytosol, mitochondrion, nucleus | 38.27 | 35.45 |
Os01t0917900-01 | Rice | nucleus | 39.71 | 35.14 |
HORVU5Hr1G075810.1 | Barley | mitochondrion, nucleus | 23.1 | 33.68 |
Bra015092.1-P | Field mustard | nucleus | 22.38 | 29.95 |
CDX77379 | Canola | cytosol | 26.35 | 29.2 |
GSMUA_Achr8P00880_001 | Banana | nucleus | 27.8 | 28.84 |
Zm00001d042359_P001 | Maize | cytosol, mitochondrion, nucleus | 31.77 | 28.76 |
Solyc06g007880.1.1 | Tomato | nucleus | 18.41 | 27.42 |
KRH66042 | Soybean | nucleus | 26.71 | 27.11 |
CDY69745 | Canola | cytosol | 23.83 | 26.94 |
AT3G25030.4 | Thale cress | cytosol | 23.83 | 26.4 |
KRH07558 | Soybean | nucleus | 24.91 | 26.34 |
AT4G13100.2 | Thale cress | extracellular | 24.91 | 26.04 |
PGSC0003DMT400003096 | Potato | nucleus | 18.05 | 25.0 |
VIT_00s0186g00090.t01 | Wine grape | cytosol, nucleus, plastid | 27.8 | 23.62 |
Bra029623.1-P | Field mustard | nucleus | 17.69 | 22.9 |
CDY24647 | Canola | nucleus | 17.33 | 22.54 |
Bra001236.1-P | Field mustard | nucleus | 17.69 | 22.17 |
HORVU7Hr1G053470.4 | Barley | cytosol, mitochondrion, plastid | 21.3 | 21.93 |
HORVU3Hr1G064710.1 | Barley | cytosol | 27.08 | 21.87 |
CDY05318 | Canola | nucleus | 16.61 | 21.7 |
Bra040362.1-P | Field mustard | nucleus | 23.83 | 19.08 |
CDX74062 | Canola | cytosol, nucleus, plastid | 23.1 | 18.93 |
AT3G07120.1 | Thale cress | nucleus | 22.38 | 17.22 |
Protein Annotations
EnsemblPlants:HORVU3Hr1G093580.1 | EnsemblPlantsGene:HORVU3Hr1G093580 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF21 | PFAM:PF13920 | PFscan:PS50089 | SEG:seg |
SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000B462B66 | UniProt:A0A287MC40 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chrchr3H:-:643166908..643168242
Molecular Weight (calculated)
30631.8 Da
IEP (calculated)
6.691
GRAVY (calculated)
-0.719
Length
277 amino acids
Sequence
(BLAST)
(BLAST)
001: HSRATATRIS VLNHRSPVTT AMPRRRRAGD RDLAMDRRPE LRRAMTLKEQ LTTPAEPAIR DLLRIPHDDE EDRPCTLMDA IDRDVRGERG AGGAINWNPL
101: RHRLWLRRAA GAWHAPGCTA KPPAAANGAS PRNSNKYNYS RGEASAAFSR APSLRDAVGS EGEEEEDSYM PPPAAASSST SLLTLLEQAD GHWDESGEHG
201: GASRCGAVDD NEEDGHGERH EEEEEVQVCC VCMVRHKGAA FIPCGHTFCR LCSRELRHTR GNCPLCNVFI QDILHIF
101: RHRLWLRRAA GAWHAPGCTA KPPAAANGAS PRNSNKYNYS RGEASAAFSR APSLRDAVGS EGEEEEDSYM PPPAAASSST SLLTLLEQAD GHWDESGEHG
201: GASRCGAVDD NEEDGHGERH EEEEEVQVCC VCMVRHKGAA FIPCGHTFCR LCSRELRHTR GNCPLCNVFI QDILHIF
001: MIQMDGGDRL RVTLLDRMST VENGRSSVTL EDILMAETSS FRSLTTPTTP VRNHSSSSLL DVMRRERRRD KTAWKSLRDK LRLKRTATGW ISSNPIPTLD
101: NHILTPDNDS HRFNRLGFLL TNSETNRSSR DVSDAAEEAA EREGRLRLGT VLAAEREEMQ PPRMSLMELL EDNDGHMYEL SARDEVEVEG RDGCDGGGEA
201: VAVTGAAELG CCVCMVRSKG AAFIPCGHTF CRLCSRELWV QRGNCPLCNT AILQVLDIF
101: NHILTPDNDS HRFNRLGFLL TNSETNRSSR DVSDAAEEAA EREGRLRLGT VLAAEREEMQ PPRMSLMELL EDNDGHMYEL SARDEVEVEG RDGCDGGGEA
201: VAVTGAAELG CCVCMVRSKG AAFIPCGHTF CRLCSRELWV QRGNCPLCNT AILQVLDIF
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JS86]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.