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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 2
  • mitochondrion 1
  • cytosol 1
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3D01G419000.1 Wheat cytosol, mitochondrion, nucleus 65.7 73.09
TraesCS3B01G459700.1 Wheat cytosol, mitochondrion, nucleus 60.29 66.27
TraesCS3A01G423800.1 Wheat cytosol 50.54 54.9
HORVU4Hr1G069780.1 Barley nucleus 32.85 54.17
HORVU5Hr1G123180.1 Barley cytosol, nucleus 34.66 50.53
HORVU1Hr1G049430.2 Barley cytosol, nucleus, plastid 32.13 50.0
EES04107 Sorghum nucleus 39.35 37.07
Zm00001d012045_P001 Maize cytosol, mitochondrion, nucleus 38.27 35.45
Os01t0917900-01 Rice nucleus 39.71 35.14
HORVU5Hr1G075810.1 Barley mitochondrion, nucleus 23.1 33.68
Bra015092.1-P Field mustard nucleus 22.38 29.95
CDX77379 Canola cytosol 26.35 29.2
GSMUA_Achr8P00880_001 Banana nucleus 27.8 28.84
Zm00001d042359_P001 Maize cytosol, mitochondrion, nucleus 31.77 28.76
Solyc06g007880.1.1 Tomato nucleus 18.41 27.42
KRH66042 Soybean nucleus 26.71 27.11
CDY69745 Canola cytosol 23.83 26.94
AT3G25030.4 Thale cress cytosol 23.83 26.4
KRH07558 Soybean nucleus 24.91 26.34
AT4G13100.2 Thale cress extracellular 24.91 26.04
PGSC0003DMT400003096 Potato nucleus 18.05 25.0
VIT_00s0186g00090.t01 Wine grape cytosol, nucleus, plastid 27.8 23.62
Bra029623.1-P Field mustard nucleus 17.69 22.9
CDY24647 Canola nucleus 17.33 22.54
Bra001236.1-P Field mustard nucleus 17.69 22.17
HORVU7Hr1G053470.4 Barley cytosol, mitochondrion, plastid 21.3 21.93
HORVU3Hr1G064710.1 Barley cytosol 27.08 21.87
CDY05318 Canola nucleus 16.61 21.7
Bra040362.1-P Field mustard nucleus 23.83 19.08
CDX74062 Canola cytosol, nucleus, plastid 23.1 18.93
AT3G07120.1 Thale cress nucleus 22.38 17.22
Protein Annotations
EnsemblPlants:HORVU3Hr1G093580.1EnsemblPlantsGene:HORVU3Hr1G093580Gene3D:3.30.40.10InterPro:IPR001841InterPro:IPR013083InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHDPANTHER:PTHR12183PANTHER:PTHR12183:SF21PFAM:PF13920PFscan:PS50089SEG:seg
SMART:SM00184SUPFAM:SSF57850UniParc:UPI000B462B66UniProt:A0A287MC40MapMan:35.2:
Description
No Description!
Coordinates
chrchr3H:-:643166908..643168242
Molecular Weight (calculated)
30631.8 Da
IEP (calculated)
6.691
GRAVY (calculated)
-0.719
Length
277 amino acids
Sequence
(BLAST)
001: HSRATATRIS VLNHRSPVTT AMPRRRRAGD RDLAMDRRPE LRRAMTLKEQ LTTPAEPAIR DLLRIPHDDE EDRPCTLMDA IDRDVRGERG AGGAINWNPL
101: RHRLWLRRAA GAWHAPGCTA KPPAAANGAS PRNSNKYNYS RGEASAAFSR APSLRDAVGS EGEEEEDSYM PPPAAASSST SLLTLLEQAD GHWDESGEHG
201: GASRCGAVDD NEEDGHGERH EEEEEVQVCC VCMVRHKGAA FIPCGHTFCR LCSRELRHTR GNCPLCNVFI QDILHIF
Best Arabidopsis Sequence Match ( AT4G13100.1 )
(BLAST)
001: MIQMDGGDRL RVTLLDRMST VENGRSSVTL EDILMAETSS FRSLTTPTTP VRNHSSSSLL DVMRRERRRD KTAWKSLRDK LRLKRTATGW ISSNPIPTLD
101: NHILTPDNDS HRFNRLGFLL TNSETNRSSR DVSDAAEEAA EREGRLRLGT VLAAEREEMQ PPRMSLMELL EDNDGHMYEL SARDEVEVEG RDGCDGGGEA
201: VAVTGAAELG CCVCMVRSKG AAFIPCGHTF CRLCSRELWV QRGNCPLCNT AILQVLDIF
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JS86]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.