Skip to main content
crop-pal logo
Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol, nucleus, plastid

Predictor Summary:
  • cytosol 1
  • plastid 1
  • nucleus 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU4Hr1G069780.1 Barley nucleus 70.79 75.0
HORVU5Hr1G123180.1 Barley cytosol, nucleus 69.66 65.26
TraesCS3D01G419000.1 Wheat cytosol, mitochondrion, nucleus 50.0 35.74
TraesCS3B01G459700.1 Wheat cytosol, mitochondrion, nucleus 47.19 33.33
HORVU3Hr1G093580.1 Barley plastid 50.0 32.13
TraesCS3A01G423800.1 Wheat cytosol 41.01 28.63
Bra015092.1-P Field mustard nucleus 32.58 28.02
HORVU5Hr1G075810.1 Barley mitochondrion, nucleus 29.21 27.37
Solyc06g007880.1.1 Tomato nucleus 26.97 25.81
GSMUA_Achr8P00880_001 Banana nucleus 36.52 24.34
CDX77379 Canola cytosol 33.71 24.0
PGSC0003DMT400003096 Potato nucleus 26.4 23.5
CDY69745 Canola cytosol 31.46 22.86
AT3G25030.4 Thale cress cytosol 32.02 22.8
EES04107 Sorghum nucleus 37.64 22.79
CDY05318 Canola nucleus 26.97 22.64
Bra001236.1-P Field mustard nucleus 28.09 22.62
CDY24647 Canola nucleus 26.97 22.54
Bra029623.1-P Field mustard nucleus 26.97 22.43
Zm00001d012045_P001 Maize cytosol, mitochondrion, nucleus 36.52 21.74
Os01t0917900-01 Rice nucleus 38.2 21.73
Zm00001d042359_P001 Maize cytosol, mitochondrion, nucleus 37.08 21.57
KRH07558 Soybean nucleus 30.34 20.61
KRH66042 Soybean nucleus 30.9 20.15
AT4G13100.2 Thale cress extracellular 29.78 20.0
HORVU7Hr1G053470.4 Barley cytosol, mitochondrion, plastid 28.09 18.59
VIT_00s0186g00090.t01 Wine grape cytosol, nucleus, plastid 32.58 17.79
AT3G07120.1 Thale cress nucleus 30.9 15.28
CDX74062 Canola cytosol, nucleus, plastid 28.65 15.09
Bra040362.1-P Field mustard nucleus 29.21 15.03
HORVU3Hr1G064710.1 Barley cytosol 15.17 7.87
Protein Annotations
EnsemblPlants:HORVU1Hr1G049430.2EnsemblPlantsGene:HORVU1Hr1G049430Gene3D:3.30.40.10InterPro:IPR001841InterPro:IPR013083InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHDPANTHER:PTHR12183PANTHER:PTHR12183:SF22PFAM:PF13920PFscan:PS50089SEG:seg
SMART:SM00184SUPFAM:SSF57850UniParc:UPI000B47BC99UniProt:A0A287FH39MapMan:35.2:
Description
No Description!
Coordinates
chrchr1H:-:365989375..365989963
Molecular Weight (calculated)
19487.0 Da
IEP (calculated)
6.612
GRAVY (calculated)
-0.587
Length
178 amino acids
Sequence
(BLAST)
001: LSGIMAYPFL EEPRRGLVVG EMRPRRRRGP VVETRIVGPT RGGADDRDGA GRASTDRGRS GAWGGRIGTR GRPAATASTS LMTLLEQADG HSDESGELGG
101: ASRCGAVDDN EEDGHRERHE EEEEEEVQVC CVCMVRHKGA AFIPCGHTFC RLCSRELRHT RGNCPLCNVF IQDILHIF
Best Arabidopsis Sequence Match ( AT4G13100.3 )
(BLAST)
001: MIQMDGGDRL RVTLLDRMST VENGRSSVTL EDILMAETSS FRSLTTPTTP VRNHSSSSLL DVMRRERRRD KTAWKSLRDK LRLKRTATGW ISSNPIPTLD
101: NHILTPDNDS HRFNRLGFLL TNSETNRSSR DVSDAAEEAA EREGRLRLGT VLAAEREPPR MSLMELLEDN DGHMYELSAR DEVEVEGRDG CDGGGEAVAV
201: TGAAELGCCV CMVRSKGAAF IPCGHTFCRL CSRELWVQRG NCPLCNTAIL QVLDIF
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JS86]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.