CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99707	Soybean	nucleus	71.27	70.87
KRH66042	Soybean	nucleus	30.7	39.93
CDY24647	Canola	nucleus	23.94	39.91
KRH07558	Soybean	nucleus	29.01	39.31
Solyc09g059990.1.1	Tomato	nucleus	27.32	39.27
Bra029623.1-P	Field mustard	nucleus	23.66	39.25
PGSC0003DMT400077589	Potato	nucleus	27.89	38.82
VIT_00s0186g00090.t01	Wine grape	cytosol, nucleus, plastid	34.37	37.42
CDY05318	Canola	nucleus	21.97	36.79
Bra001236.1-P	Field mustard	nucleus	21.69	34.84
CDX74062	Canola	cytosol, nucleus, plastid	30.7	32.25
Bra040362.1-P	Field mustard	nucleus	30.14	30.92
AT3G07120.1	Thale cress	nucleus	30.14	29.72
KRH02010	Soybean	cytosol	7.61	13.64
KRH51146	Soybean	cytosol	7.61	13.04
KRH11501	Soybean	cytosol, mitochondrion, nucleus, plastid	6.76	11.48
KRH36518	Soybean	mitochondrion	5.63	10.2

Protein Annotations

EMBL:ACUP02005354	EnsemblPlants:KRH46683	EnsemblPlantsGene:GLYMA_08G350900	EntrezGene:100776257	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	ncoils:Coil	PANTHER:PTHR12183	PANTHER:PTHR12183:SF20
PFAM:PF13920	PFscan:PS50089	ProteinID:KRH46683	ProteinID:KRH46683.1	SEG:seg	SMART:SM00184
SUPFAM:SSF57850	UniParc:UPI00023CAF73	UniProt:K7LAP6	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr8:+:46460681..46463450

Molecular Weight (calculated)

39464.8 Da

IEP (calculated)

4.676

GRAVY (calculated)

-0.837

Length

355 amino acids

Sequence
(BLAST)

001: MEGRRRVTLH EQMSASDNSR ARELAGLTLD DVLGNQKRPS STPPSQQLPK SRTLLDIIKE DESNKKDRRS WKAFKDKLRL KRAGSAWTST IHIPTSDVPI
101: PNPNSRIFTQ FGHRNSVQSP TQTLTLTHSD SDMSTPYDAR QVEDLDPAAA DDSGYPATMP PAVRPQFSRR GSTRFDGDPS GENTAGTLRP QLSRRNSTNM
201: PSEPYKRGRV VTFRDTFDDE DDGGEKPGEG RALSAREAVA AQEAAEAAAQ EAEEAEEQAP VMMSLMDLLE ETDREMGLEG SRYILSDDDE DEDEDDDGGE
301: GSMEHTCCVC MVRHKAAAFI PCGHTFCRMC SRELMVSRGN CPRCNNFILE ILDIF

Best Arabidopsis Sequence Match ( AT3G07120.1 )
(BLAST)

001: MSALKSRSNS LAGLSLDAVL GGEILIEPPS LPSPPPLPSK SLVPHRPTSQ TLFDIIREEY AKEGHKDRTT WQIFREKLRL KRTGSAWTSS LHIPASDILI
101: PNPKHIGTAF RSHSAGLNIR DLVHAIPMSD PPGSSGRAMF TRGSSMRVGS SKNPDDSPDI SVLEDGPPSR SFKPQLSRHD SVRDHSEGEE NNRRRHPIVT
201: FVEERQMSAR EAVAAQEAAE AEAAAAGGSE DEDDDDEEDD SGETEEMKSS SASEPKQTMS LMDLLEETDR QMGLTGSRYA MDEDEEYEED EEDENNEEEG
301: DSHGGGEGEL SCCVCMVKIK GASFTPCGHT FCKLCSKELM AQKGHCPVCS SFVLEFLEIF

Arabidopsis Description

At3g07120 [Source:UniProtKB/TrEMBL;Acc:Q9SFU2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.