Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g059990.1.1 | Tomato | nucleus | 79.61 | 82.19 |
| CDY69745 | Canola | cytosol | 33.73 | 35.1 |
| AT3G25030.4 | Thale cress | cytosol | 34.12 | 34.8 |
| CDX77379 | Canola | cytosol | 33.73 | 34.4 |
| PGSC0003DMT400003096 | Potato | nucleus | 26.67 | 34.0 |
| Bra015092.1-P | Field mustard | nucleus | 26.67 | 32.85 |
| VIT_00s0186g00090.t01 | Wine grape | cytosol, nucleus, plastid | 36.47 | 28.53 |
| AT4G13100.2 | Thale cress | extracellular | 29.41 | 28.3 |
| KRH46683 | Soybean | nucleus | 38.82 | 27.89 |
| KRG99707 | Soybean | nucleus | 34.9 | 24.93 |
| PGSC0003DMT400061842 | Potato | mitochondrion | 9.41 | 9.96 |
| PGSC0003DMT400043086 | Potato | nucleus | 7.45 | 9.13 |
| PGSC0003DMT400001832 | Potato | nucleus | 4.31 | 6.29 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400077589 | EnsemblPlantsGene:PGSC0003DMG400030177 | EntrezGene:102589913 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF17 | PFAM:PF13920 | PFscan:PS50089 |
| PGSC:PGSC0003DMG400030177 | RefSeq:XP_006356785.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000295FE2B |
| UniProt:M1CYL4 | MapMan:35.2 | : | : | : | : |
Description
Zinc finger family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400030177]
Coordinates
chr9:-:43193219..43194440
Molecular Weight (calculated)
28145.8 Da
IEP (calculated)
4.498
GRAVY (calculated)
-0.478
Length
255 amino acids
Sequence
(BLAST)
(BLAST)
001: MESNTSLRTL MFNDKIDTPN LSDFLRVKQD HNNNLAGLTL GAVLSNKRES SSSSSPVHRS NRTLFDIIRD DPSSNSRKPR KWKYFRNKLR LKPNISIQHH
101: SNPITPVENF TSASGSTSRI LETAESDGEE IGVELEDQPA RMSLMALLTE NDGDESAFMI EDGDGDGDEE EDELDNNDDT GVAGIEAGTI AVADVVAVSA
201: GGEYNNCCVC MVRHKGAAFI PCGHTFCRLC SRELWVQRGN CPLCNNFILE VLDIF
101: SNPITPVENF TSASGSTSRI LETAESDGEE IGVELEDQPA RMSLMALLTE NDGDESAFMI EDGDGDGDEE EDELDNNDDT GVAGIEAGTI AVADVVAVSA
201: GGEYNNCCVC MVRHKGAAFI PCGHTFCRLC SRELWVQRGN CPLCNNFILE VLDIF
001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKRNGS VWISSNSIPS
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF
Arabidopsis Description
At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.