Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH46683 | Soybean | nucleus | 70.87 | 71.27 |
| KRH07558 | Soybean | nucleus | 28.29 | 38.55 |
| KRH66042 | Soybean | nucleus | 29.41 | 38.46 |
| VIT_00s0186g00090.t01 | Wine grape | cytosol, nucleus, plastid | 35.01 | 38.34 |
| CDY24647 | Canola | nucleus | 22.41 | 37.56 |
| CDY05318 | Canola | nucleus | 22.13 | 37.26 |
| Solyc09g059990.1.1 | Tomato | nucleus | 25.77 | 37.25 |
| Bra029623.1-P | Field mustard | nucleus | 22.13 | 36.92 |
| Bra001236.1-P | Field mustard | nucleus | 22.41 | 36.2 |
| PGSC0003DMT400077589 | Potato | nucleus | 24.93 | 34.9 |
| CDX74062 | Canola | cytosol, nucleus, plastid | 31.93 | 33.73 |
| Bra040362.1-P | Field mustard | nucleus | 30.25 | 31.21 |
| AT3G07120.1 | Thale cress | nucleus | 31.09 | 30.83 |
| KRH51146 | Soybean | cytosol | 8.4 | 14.49 |
| KRH02010 | Soybean | cytosol | 7.84 | 14.14 |
| KRH36518 | Soybean | mitochondrion | 6.16 | 11.22 |
| KRH11501 | Soybean | cytosol, mitochondrion, nucleus, plastid | 6.44 | 11.0 |
Protein Annotations
| EMBL:ACUP02011280 | EnsemblPlants:KRG99707 | EnsemblPlantsGene:GLYMA_18G165000 | EntrezGene:100795449 | Gene3D:3.30.40.10 | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 |
| PFAM:PF13920 | PFscan:PS50089 | ProteinID:KRG99707 | ProteinID:KRG99707.1 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | UniParc:UPI00023DB9E1 | UniProt:K7MSP8 | MapMan:35.2 | : | : |
Description
hypothetical protein
Coordinates
chr18:-:38434711..38437087
Molecular Weight (calculated)
39441.4 Da
IEP (calculated)
4.721
GRAVY (calculated)
-0.844
Length
357 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGRRRITLH EQMSASDNSR ARELAGLTLD DVLGNQKKFS STPPSQQLPK SRTLLDIIKE DESNKKDRRS WKAFKDKLRL KRAGSAWTSS IHIPTSDVPI
101: PNPNSRTFTQ FGRRNSVRSP TQTQTHSDSD MSTPYNAHQV EDLDPADDDS GSPTTGPPAV RPQFSRHGST RFAGDASGDN TAGTLRPQLS RRNSTNISSE
201: PYKRGRVVTF RDSFDDEEAD GEDGKKPGEG RALSAREAVA AQEAAEAAAQ EAEAAEQAPV TMSLMDLLEE TDREMGLEGS RYILSDDEDF DEDEDEDDDG
301: GEGSMEHTCC VCMVKHKAAA FIPCGHTFCR MCSRELMVSR GNCPLCNNFI LEILDIF
101: PNPNSRTFTQ FGRRNSVRSP TQTQTHSDSD MSTPYNAHQV EDLDPADDDS GSPTTGPPAV RPQFSRHGST RFAGDASGDN TAGTLRPQLS RRNSTNISSE
201: PYKRGRVVTF RDSFDDEEAD GEDGKKPGEG RALSAREAVA AQEAAEAAAQ EAEAAEQAPV TMSLMDLLEE TDREMGLEGS RYILSDDEDF DEDEDEDDDG
301: GEGSMEHTCC VCMVKHKAAA FIPCGHTFCR MCSRELMVSR GNCPLCNNFI LEILDIF
001: MSALKSRSNS LAGLSLDAVL GGEILIEPPS LPSPPPLPSK SLVPHRPTSQ TLFDIIREEY AKEGHKDRTT WQIFREKLRL KRTGSAWTSS LHIPASDILI
101: PNPKHIGTAF RSHSAGLNIR DLVHAIPMSD PPGSSGRAMF TRGSSMRVGS SKNPDDSPDI SVLEDGPPSR SFKPQLSRHD SVRDHSEGEE NNRRRHPIVT
201: FVEERQMSAR EAVAAQEAAE AEAAAAGGSE DEDDDDEEDD SGETEEMKSS SASEPKQTMS LMDLLEETDR QMGLTGSRYA MDEDEEYEED EEDENNEEEG
301: DSHGGGEGEL SCCVCMVKIK GASFTPCGHT FCKLCSKELM AQKGHCPVCS SFVLEFLEIF
101: PNPKHIGTAF RSHSAGLNIR DLVHAIPMSD PPGSSGRAMF TRGSSMRVGS SKNPDDSPDI SVLEDGPPSR SFKPQLSRHD SVRDHSEGEE NNRRRHPIVT
201: FVEERQMSAR EAVAAQEAAE AEAAAAGGSE DEDDDDEEDD SGETEEMKSS SASEPKQTMS LMDLLEETDR QMGLTGSRYA MDEDEEYEED EEDENNEEEG
301: DSHGGGEGEL SCCVCMVKIK GASFTPCGHT FCKLCSKELM AQKGHCPVCS SFVLEFLEIF
Arabidopsis Description
At3g07120 [Source:UniProtKB/TrEMBL;Acc:Q9SFU2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.