CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH02010	Soybean	cytosol	70.05	73.23
KRH36518	Soybean	mitochondrion	57.49	60.71
KRH11501	Soybean	cytosol, mitochondrion, nucleus, plastid	59.9	59.33
Solyc02g081180.1.1	Tomato	nucleus	45.89	46.8
GSMUA_Achr1P18240_001	Banana	nucleus	38.65	45.45
PGSC0003DMT400043086	Potato	nucleus	45.41	45.19
GSMUA_Achr3P12970_001	Banana	cytosol	37.2	44.51
PGSC0003DMT400061842	Potato	mitochondrion	43.96	37.76
Solyc03g031830.1.1	Tomato	nucleus	43.0	36.33
KRH07558	Soybean	nucleus	12.08	9.54
KRH66042	Soybean	nucleus	12.56	9.52
KRG99707	Soybean	nucleus	14.49	8.4
KRH46683	Soybean	nucleus	13.04	7.61

Protein Annotations

EMBL:ACUP02004729	EnsemblPlants:KRH51146	EnsemblPlantsGene:GLYMA_07G264100	EntrezGene:106799504	Gene3D:3.30.40.10	InterPro:IPR001841
InterPro:IPR013083	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR12183	PANTHER:PTHR12183:SF20	PFAM:PF13920
PFscan:PS50089	ProteinID:KRH51146	ProteinID:KRH51146.1	SEG:seg	SMART:SM00184	SUPFAM:SSF57850
UniParc:UPI0002339082	UniProt:I1KNH8	MapMan:35.2	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:43837534..43838884

Molecular Weight (calculated)

22672.3 Da

IEP (calculated)

8.267

GRAVY (calculated)

-0.395

Length

207 amino acids

Sequence
(BLAST)

001: MSQLGLILQE SLRTERETRT ILGLLTEQMD GVDRAQRRRR TLKERLRFTG IGCCGATWVF RPIVREEGGG AQAHQQQTNA AQDPNPNDPK YVSPSPSGTS
101: MNLAAALAAE RQLRDGEGEG RRVVAPGTPL RVSLMRLLEE TEGGDAEKGG GGVGNDWVCC VCMGRKKGAA FIPCGHTFCR VCSRELWLNR GTCPLCNRSI
201: LEILDIF

Best Arabidopsis Sequence Match ( AT4G03965.1 )
(BLAST)

001: MSQLGVETSQ AQPETPQSTT FLDLLRLQMD GLDRSRRRKR TLKERLGFKR IGCCGPTWGL RLTSNTGEDD DEPFENRLVS GSDHVTGPLN QGMNLATALA
101: AERNYRTEET EASGSLTPLK VSLMRLLEET AERVVVEENE TERVTASASS TVRGVNNDSV CCVCMGRKKG AAFIPCGHTF CRVCSREVWL NRGSCPLCNR
201: PIIEILDIY

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q5XV87]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.