Factsheet for Solyc02g081180.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g021650.2.1
Solyc03g093680.2.1
Solyc08g059700.1.1
Solyc09g098160.2.1
Solyc09g098180.2.1
Solyc10g005020.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G22250.1	Solyc03g093680.2.1	AT1G02140.1	21798944
AT4G22250.1	Solyc09g098160.2.1	AT3G59220.1	21798944
AT4G22250.1	Solyc09g098180.2.1	AT3G59220.1	21798944
AT4G22250.1	Solyc10g005020.2.1	AT3G61920.1	21798944
AT4G22250.1	Solyc02g021650.2.1	AT4G05420.1	21798944
AT4G22250.1	Solyc08g059700.1.1	AT4G32295.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043086	Potato	nucleus	84.73	82.69
KRH36518	Soybean	mitochondrion	46.31	47.96
KRH02010	Soybean	cytosol	46.31	47.47
KRH51146	Soybean	cytosol	46.8	45.89
KRH11501	Soybean	cytosol, mitochondrion, nucleus, plastid	46.8	45.45
AT4G03965.1	Thale cress	cytosol	45.32	44.02
GSMUA_Achr1P18240_001	Banana	nucleus	36.95	42.61
Solyc07g049400.1.1	Tomato	mitochondrion	35.47	42.35
GSMUA_Achr3P12970_001	Banana	cytosol	35.96	42.2
AT4G22250.1	Thale cress	cytosol	43.84	41.59
CDY21289	Canola	nucleus	40.89	41.09
CDX90849	Canola	nucleus	40.39	40.59
Bra000784.1-P	Field mustard	nucleus	40.39	40.59
Solyc03g031830.1.1	Tomato	nucleus	48.77	40.41
CDX82926	Canola	nucleus	39.9	40.3
Bra019391.1-P	Field mustard	nucleus	37.93	39.09
CDX79140	Canola	cytosol	39.9	38.94
CDX98736	Canola	nucleus	37.93	38.31
Bra013603.1-P	Field mustard	cytosol	30.05	30.05
Solyc06g007880.1.1	Tomato	nucleus	10.34	11.29
Solyc09g059990.1.1	Tomato	nucleus	8.37	6.88

Protein Annotations

EnsemblPlants:Solyc02g081180.1.1	EnsemblPlantsGene:Solyc02g081180.1	Gene3D:3.30.40.10	InterPro:IPR001841	InterPro:IPR013083	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR12183	PANTHER:PTHR12183:SF20	PFAM:PF13920	PFscan:PS50089	SEG:seg
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI00027675C3	UniProt:K4B9Y8	MapMan:35.2	:

Description

No Description!

Coordinates

chr2:+:45240570..45241181

Molecular Weight (calculated)

22203.5 Da

IEP (calculated)

4.954

GRAVY (calculated)

-0.376

Length

203 amino acids

Sequence
(BLAST)

001: MAELLRERMD GDDRVVRRRK SLTQRLGFTG SIACCGTTLC LRPASLSVMD DDEPPAELGR ETQPEIESVN ILCLADHITT GSGMNLAAAL LAERNFRSAQ
101: DSDSPGPNTS PLRSNEDGPG TGGGSPYRVS LMRLLEETNG WDEKEESGLG NDRVCCVCMG RKKGAAFIPC GHTYCRVCSR ELWLNRGCCP LCNRSILEIL
201: DIY

Best Arabidopsis Sequence Match ( AT4G03965.1 )
(BLAST)

001: MSQLGVETSQ AQPETPQSTT FLDLLRLQMD GLDRSRRRKR TLKERLGFKR IGCCGPTWGL RLTSNTGEDD DEPFENRLVS GSDHVTGPLN QGMNLATALA
101: AERNYRTEET EASGSLTPLK VSLMRLLEET AERVVVEENE TERVTASASS TVRGVNNDSV CCVCMGRKKG AAFIPCGHTF CRVCSREVWL NRGSCPLCNR
201: PIIEILDIY

Arabidopsis Description

RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q5XV87]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.