Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400001832 | Potato | nucleus | 82.94 | 80.57 |
| VIT_12s0059g01370.t01 | Wine grape | cytosol | 46.47 | 43.65 |
| GSMUA_Achr1P18240_001 | Banana | nucleus | 41.76 | 40.34 |
| GSMUA_Achr3P12970_001 | Banana | cytosol | 39.41 | 38.73 |
| Solyc02g081180.1.1 | Tomato | nucleus | 42.35 | 35.47 |
| Solyc03g031830.1.1 | Tomato | nucleus | 41.18 | 28.57 |
| Solyc06g007880.1.1 | Tomato | nucleus | 8.82 | 8.06 |
| Solyc09g059990.1.1 | Tomato | nucleus | 7.06 | 4.86 |
Protein Annotations
| EnsemblPlants:Solyc07g049400.1.1 | EnsemblPlantsGene:Solyc07g049400.1 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF22 | PFAM:PF13920 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000276B247 | UniProt:K4CF43 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr7:+:59674298..59674810
Molecular Weight (calculated)
19390.2 Da
IEP (calculated)
4.829
GRAVY (calculated)
-0.409
Length
170 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGEDRPRTM WRSLKQRLGF TGLVCCGSSW NLRVSDVTMR EEEAQQFEAQ LFGEEEPIIG AHQGNVNLAT ALAAERRYRS VDATAELKTL MRLFEETDGI
101: DEEKSLKWYI KEEGRGGIDE MCCVCMERNK GAAFIPCGHT YCRVCSRELW MKRGSCPLCN CSIDEILNIF
101: DEEKSLKWYI KEEGRGGIDE MCCVCMERNK GAAFIPCGHT YCRVCSRELW MKRGSCPLCN CSIDEILNIF
001: MSQLGVETSQ AQPETPQSTT FLDLLRLQMD GLDRSRRRKR TLKERLGFKR IGCCGPTWGL RLTSNTGEDD DEPFENRLVS GSDHVTGPLN QGMNLATALA
101: AERNYRTEET EASGSLTPLK VSLMRLLEET AERVVVEENE TERVTASASS TVRGVNNDSV CCVCMGRKKG AAFIPCGHTF CRVCSREVWL NRGSCPLCNR
201: PIIEILDIY
101: AERNYRTEET EASGSLTPLK VSLMRLLEET AERVVVEENE TERVTASASS TVRGVNNDSV CCVCMGRKKG AAFIPCGHTF CRVCSREVWL NRGSCPLCNR
201: PIIEILDIY
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q5XV87]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.