Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400077589 | Potato | nucleus | 82.19 | 79.61 |
| Solyc06g007880.1.1 | Tomato | nucleus | 27.53 | 36.56 |
| CDY69745 | Canola | cytosol | 35.63 | 35.92 |
| CDX77379 | Canola | cytosol | 35.63 | 35.2 |
| Bra015092.1-P | Field mustard | nucleus | 28.74 | 34.3 |
| AT3G25030.4 | Thale cress | cytosol | 34.01 | 33.6 |
| AT4G13100.2 | Thale cress | extracellular | 30.77 | 28.68 |
| VIT_00s0186g00090.t01 | Wine grape | cytosol, nucleus, plastid | 37.25 | 28.22 |
| KRH46683 | Soybean | nucleus | 39.27 | 27.32 |
| KRG99707 | Soybean | nucleus | 37.25 | 25.77 |
| Solyc03g031830.1.1 | Tomato | nucleus | 9.31 | 9.39 |
| Solyc02g081180.1.1 | Tomato | nucleus | 6.88 | 8.37 |
| Solyc07g049400.1.1 | Tomato | mitochondrion | 4.86 | 7.06 |
Protein Annotations
| EnsemblPlants:Solyc09g059990.1.1 | EnsemblPlantsGene:Solyc09g059990.1 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_RING |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 | PFAM:PF13920 | PFscan:PS50089 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000276B945 | UniProt:K4CTT2 | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr9:+:57024053..57024796
Molecular Weight (calculated)
27381.0 Da
IEP (calculated)
4.430
GRAVY (calculated)
-0.411
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MESNTSLRTL MFNDKIDTPN LSDFLRVKQD HNNNLTGLTL GAVLSNVRES SSSSSLVHNS SRTLFDIIRD DPSNNSRKPR KWEHFRNKLR LKPNISIQHH
101: SNPITPVENF TSASGSTSRI LETAEIDGDE TGVELEDQPA RMSLMALLTE NDGDESAYMI EDGDADEEED ELDVAGIETG TIAVADVVDV GAGGEYNNCC
201: VCMVRHKGAA FIPCGHTFCR LCSRELWVQR GNCPLCNNFI LEVLDIF
101: SNPITPVENF TSASGSTSRI LETAEIDGDE TGVELEDQPA RMSLMALLTE NDGDESAYMI EDGDADEEED ELDVAGIETG TIAVADVVDV GAGGEYNNCC
201: VCMVRHKGAA FIPCGHTFCR LCSRELWVQR GNCPLCNNFI LEVLDIF
001: MIQMDGGDRL RVTLLDRMST VESSRSCLTL EAILMADKNR TSPQILSPPP SRSQSNRSLV EVMQREHRHS RDKTAWKSLR EKLRLKRNGS VWISSNSIPS
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF
101: LDTPIPNRDN VSHQLGFLLS NSGNVTEEAS SVEGRIRLGA VLAEERALSA REEETPAERE VEPARMSLME LLEENEGQMS FVSVDGEAEE EVAAVTAAEI
201: SCCVCMVRSK GAAFIPCGHT FCRLCSRELW VQRGNCPLCN TTILEVLDLF
Arabidopsis Description
At3g25030 [Source:UniProtKB/TrEMBL;Acc:Q9LJR9]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.