Factsheet for Solyc03g093680.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 4
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g074130.2.1
Solyc08g078700.2.1
Solyc10g005650.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02140.1	Solyc08g078700.2.1	AT4G25200.1	21798944
AT1G02140.1	Solyc06g074130.2.1	AT5G22120.1	21798944
AT1G02140.1	Solyc10g005650.2.1	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH48832	Soybean	nucleus	84.77	84.77
CDX90077	Canola	nucleus	82.78	84.46
KRH11252	Soybean	nucleus	83.44	83.44
VIT_16s0013g00610.t01	Wine grape	nucleus	82.78	82.78
CDY38056	Canola	nucleus	82.12	82.67
AT1G02140.1	Thale cress	nucleus	80.13	80.67
Bra033217.1-P	Field mustard	nucleus	54.3	80.39
CDY15128	Canola	nucleus	82.78	80.13
Os12t0287200-01	Rice	nucleus	82.78	78.12
GSMUA_Achr11P...	Banana	nucleus	53.64	77.88
TraesCS7D01G320000.1	Wheat	nucleus	83.44	77.3
TraesCS7B01G224300.1	Wheat	nucleus	83.44	77.3
TraesCS7A01G323400.1	Wheat	nucleus	83.44	77.3
GSMUA_Achr11P...	Banana	nucleus	52.98	76.92
HORVU7Hr1G077420.4	Barley	nucleus	82.78	76.22
EES13219	Sorghum	nucleus	79.47	75.47
Zm00001d049723_P001	Maize	extracellular	79.47	74.53
EER99060	Sorghum	nucleus	74.83	71.07
Os08t0107900-01	Rice	nucleus	75.5	69.94
Zm00001d035019_P001	Maize	nucleus	75.5	65.14
KRH66476	Soybean	nucleus	79.47	61.54
PGSC0003DMT400054151	Potato	nucleus	88.74	59.29
GSMUA_Achr11P...	Banana	mitochondrion	47.02	56.8
Bra032668.1-P	Field mustard	cytosol	78.81	44.74

Protein Annotations

MapMan:17.3.1.1.2	Gene3D:3.30.1560.10	GO:GO:0000003	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009507	GO:GO:0009536	GO:GO:0009605
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009856	GO:GO:0009987	GO:GO:0010183
GO:GO:0010628	GO:GO:0016607	GO:GO:0035145	InterPro:IPR036605	UniProt:K4BIP4	EMBL:KF051001
InterPro:Mago_nashi	InterPro:Mago_nashi_sf	PFAM:PF02792	PANTHER:PTHR12638	SUPFAM:SSF89817	EnsemblPlantsGene:Solyc03g093680.2
EnsemblPlants:Solyc03g093680.2.1	UniParc:UPI00027692D0	:	:	:	:

Description

Mago nashi protein [Source:UniProtKB/TrEMBL;Acc:K4BIP4]

Coordinates

chr3:+:55317103..55321529

Molecular Weight (calculated)

17803.3 Da

IEP (calculated)

5.316

GRAVY (calculated)

-0.521

Length

151 amino acids

Sequence
(BLAST)

001: MGEMAENDEF YLRYYVGHKG KFGHEFLEFE FRPDGKLRYA NNSNYKNDTM IRKEVFLTPS VLKECRRIVA DSEIMKEDDN NWPEPDRVGR QELEIVMGNE
101: HISFTTSKIG SLMDVQTSND PEGLRIFYYL VQDLKCFVFS LISLHFKIKP I

Best Arabidopsis Sequence Match ( AT1G02140.1 )
(BLAST)

001: MAAEEATEFY LRYYVGHKGK FGHEFLEFEF REDGKLRYAN NSNYKNDTII RKEVFLTPAV LKECKRIVSE SEILKEDDNN WPEPDRVGKQ ELEIVLGNEH
101: ISFATSKIGS LVDCQSSNDP EGLRIFYYLV QDLKCLVFSL ISLHFKIKPI

Arabidopsis Description

MEE63MEE63 [Source:UniProtKB/TrEMBL;Acc:A0A178WA48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.