Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400012249 | |
| PGSC0003DMT400015182 | |
| PGSC0003DMT400029209 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G02140.1 | PGSC0003DMT400012249 | AT4G25200.1 | 21798944 |
| AT1G02140.1 | PGSC0003DMT400015182 | AT5G22120.1 | 21798944 |
| AT1G02140.1 | PGSC0003DMT400029209 | AT5G56290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g093680.2.1 | Tomato | nucleus | 59.29 | 88.74 |
| CDX90077 | Canola | nucleus | 53.1 | 81.08 |
| CDY38056 | Canola | nucleus | 52.65 | 79.33 |
| KRH48832 | Soybean | nucleus | 52.65 | 78.81 |
| VIT_16s0013g00610.t01 | Wine grape | nucleus | 52.21 | 78.15 |
| KRH11252 | Soybean | nucleus | 51.77 | 77.48 |
| AT1G02140.1 | Thale cress | nucleus | 51.33 | 77.33 |
| CDY15128 | Canola | nucleus | 53.1 | 76.92 |
| Bra033217.1-P | Field mustard | nucleus | 34.07 | 75.49 |
| Os12t0287200-01 | Rice | nucleus | 52.21 | 73.75 |
| TraesCS7D01G320000.1 | Wheat | nucleus | 52.65 | 73.01 |
| TraesCS7B01G224300.1 | Wheat | nucleus | 52.65 | 73.01 |
| TraesCS7A01G323400.1 | Wheat | nucleus | 52.65 | 73.01 |
| HORVU7Hr1G077420.4 | Barley | nucleus | 52.65 | 72.56 |
| EES13219 | Sorghum | nucleus | 50.88 | 72.33 |
| GSMUA_Achr11P... | Banana | nucleus | 33.19 | 72.12 |
| GSMUA_Achr11P... | Banana | nucleus | 32.74 | 71.15 |
| Zm00001d049723_P001 | Maize | extracellular | 50.44 | 70.81 |
| Os08t0107900-01 | Rice | nucleus | 49.56 | 68.71 |
| EER99060 | Sorghum | nucleus | 47.79 | 67.92 |
| Zm00001d035019_P001 | Maize | nucleus | 49.56 | 64.0 |
| KRH66476 | Soybean | nucleus | 53.54 | 62.05 |
| GSMUA_Achr11P... | Banana | mitochondrion | 28.76 | 52.0 |
| Bra032668.1-P | Field mustard | cytosol | 53.1 | 45.11 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400054151 | EnsemblPlantsGene:PGSC0003DMG400021002 | Gene3D:3.30.1560.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | InterPro:IPR036605 | InterPro:Mago_nashi | InterPro:Mago_nashi_sf | PANTHER:PTHR12638 | PFAM:PF02792 |
| PGSC:PGSC0003DMG400021002 | SEG:seg | SUPFAM:SSF89817 | UniParc:UPI00029558D3 | UniProt:M1BVW9 | MapMan:17.3.1.1.2 |
Description
Mago nashi 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400021002]
Coordinates
chr3:-:37494051..37497436
Molecular Weight (calculated)
25674.5 Da
IEP (calculated)
5.908
GRAVY (calculated)
-0.467
Length
226 amino acids
Sequence
(BLAST)
(BLAST)
001: MAENDEFYLR YYVGHKGKFG HEFLEFEFRP DGKLRYANNS NYKNDTMIRK EVFLTPSVLK ECRRIVADSE IMKEDDNNWP EPDRVGRQEL EIVMGNEHIS
101: FTTSKIGSLM DVQTSNDPEG LRIFYYLVQD GKKVGYGIRI QRGEGGFFWS LDLRRTMVEG ARCGEASGKV EAVWSYHEGL QMVHGYNGVE VGLTVLSVVL
201: VTGPALPPVP GTSHQHMNEA TLLTKT
101: FTTSKIGSLM DVQTSNDPEG LRIFYYLVQD GKKVGYGIRI QRGEGGFFWS LDLRRTMVEG ARCGEASGKV EAVWSYHEGL QMVHGYNGVE VGLTVLSVVL
201: VTGPALPPVP GTSHQHMNEA TLLTKT
001: MAAEEATEFY LRYYVGHKGK FGHEFLEFEF REDGKLRYAN NSNYKNDTII RKEVFLTPAV LKECKRIVSE SEILKEDDNN WPEPDRVGKQ ELEIVLGNEH
101: ISFATSKIGS LVDCQSSNDP EGLRIFYYLV QDLKCLVFSL ISLHFKIKPI
101: ISFATSKIGS LVDCQSSNDP EGLRIFYYLV QDLKCLVFSL ISLHFKIKPI
Arabidopsis Description
MEE63MEE63 [Source:UniProtKB/TrEMBL;Acc:A0A178WA48]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.