Factsheet for Bra033217.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 2
nucleus 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002390.1-P
Bra002391.1-P
Bra002826.1-P
Bra006611.1-P
Bra006612.1-P
Bra013872.1-P
Bra028938.1-P
Bra035613.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G02140.1	Bra013872.1-P	AT4G25200.1	21798944
AT1G02140.1	Bra002390.1-P	AT5G22120.1	21798944
AT1G02140.1	Bra002391.1-P	AT5G22120.1	21798944
AT1G02140.1	Bra006611.1-P	AT5G22120.1	21798944
AT1G02140.1	Bra006612.1-P	AT5G22120.1	21798944
AT1G02140.1	Bra002826.1-P	AT5G56290.1	21798944
AT1G02140.1	Bra028938.1-P	AT5G56290.1	21798944
AT1G02140.1	Bra035613.1-P	AT5G56290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	nucleus	83.33	81.73
GSMUA_Achr11P...	Banana	nucleus	82.35	80.77
CDX90077	Canola	nucleus	100.0	68.92
AT1G02140.1	Thale cress	nucleus	92.16	62.67
KRH48832	Soybean	nucleus	87.25	58.94
VIT_16s0013g00610.t01	Wine grape	nucleus	87.25	58.94
KRH11252	Soybean	nucleus	84.31	56.95
GSMUA_Achr11P...	Banana	mitochondrion	69.61	56.8
Solyc03g093680.2.1	Tomato	nucleus	80.39	54.3
Os12t0287200-01	Rice	nucleus	84.31	53.75
EES13219	Sorghum	nucleus	83.33	53.46
Zm00001d049723_P001	Maize	extracellular	83.33	52.8
TraesCS7A01G323400.1	Wheat	nucleus	83.33	52.15
TraesCS7B01G224300.1	Wheat	nucleus	83.33	52.15
TraesCS7D01G320000.1	Wheat	nucleus	83.33	52.15
HORVU7Hr1G077420.4	Barley	nucleus	83.33	51.83
EER99060	Sorghum	nucleus	74.51	47.8
Os08t0107900-01	Rice	nucleus	72.55	45.4
Zm00001d035019_P001	Maize	nucleus	71.57	41.71
KRH66476	Soybean	nucleus	73.53	38.46
PGSC0003DMT400054151	Potato	nucleus	75.49	34.07
Bra032668.1-P	Field mustard	cytosol	88.24	33.83

Protein Annotations

EnsemblPlants:Bra033217.1	EnsemblPlants:Bra033217.1-P	EnsemblPlantsGene:Bra033217	Gene3D:3.30.1560.10	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	InterPro:IPR036605	InterPro:Mago_nashi	InterPro:Mago_nashi_sf	PANTHER:PTHR12638
PFAM:PF02792	SUPFAM:SSF89817	UniParc:UPI000254372D	UniProt:M4EWN3	MapMan:17.3.1.1.2	:

Description

AT1G02140 (E=6e-050) MEE63, MAGO, HAP1 | MAGO (MAGO NASHI); protein binding

Coordinates

chrA10:-:4847421..4848111

Molecular Weight (calculated)

11815.5 Da

IEP (calculated)

5.199

GRAVY (calculated)

-0.072

Length

102 amino acids

Sequence
(BLAST)

001: MIRKEVFLTP AVLKECKRIV SESEIMKEDD FKWPEPDRVG RQELEIVMGN EHISFATSKI GSLVDVQSSD DPEGLRIFYY LVQDLKCLVF SLISLHFKIK
101: PI

Best Arabidopsis Sequence Match ( AT1G02140.1 )
(BLAST)

001: MAAEEATEFY LRYYVGHKGK FGHEFLEFEF REDGKLRYAN NSNYKNDTII RKEVFLTPAV LKECKRIVSE SEILKEDDNN WPEPDRVGKQ ELEIVLGNEH
101: ISFATSKIGS LVDCQSSNDP EGLRIFYYLV QDLKCLVFSL ISLHFKIKPI

Arabidopsis Description

MEE63MEE63 [Source:UniProtKB/TrEMBL;Acc:A0A178WA48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.