Factsheet for Bra035613.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, extracellular

Predictor Summary:

extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 4
peroxisome 1
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus, peroxisome, plasma membrane
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002685.1-P
Bra006793.1-P
Bra009951.1-P
Bra020404.1-P
Bra022105.1-P
Bra026136.1-P
Bra027479.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56290.1	Bra022105.1-P	AT3G01910.1	21798944
AT5G56290.1	Bra026136.1-P	AT3G01910.1	21798944
AT5G56290.1	Bra009951.1-P	AT5G27600.1	16256065
AT5G56290.1	Bra027479.1-P	AT5G43280.1	24879895
AT5G56290.1	Bra002685.1-P	AT5G57910.1	21798944
AT5G56290.1	Bra006793.1-P	AT5G57910.1	21798944
AT5G56290.1	Bra020404.1-P	AT5G57910.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY20736	Canola	extracellular	48.31	89.06
Bra028938.1-P	Field mustard	plastid	37.29	6.03
AT5G56290.1	Thale cress	plastid	36.44	5.91
Solyc10g005650.2.1	Tomato	plastid	34.75	5.51
VIT_19s0015g01940.t01	Wine grape	plastid	33.9	5.43
KRH56371	Soybean	plastid	33.9	5.43
KRH62568	Soybean	plastid	33.9	5.42
GSMUA_Achr7P20310_001	Banana	plastid	34.75	5.41
Bra002826.1-P	Field mustard	plastid	34.75	5.38
PGSC0003DMT400029209	Potato	cytosol, plastid	33.9	5.38
EES15431	Sorghum	plastid	33.05	5.31
Os08t0500100-02	Rice	cytosol	33.05	5.3
HORVU7Hr1G049220.10	Barley	plastid	33.05	5.21
Zm00001d031327_P009	Maize	plastid	32.2	5.14
TraesCS7A01G241500.5	Wheat	cytosol, plastid	32.2	5.08
TraesCS7B01G137000.2	Wheat	cytosol, plastid	32.2	5.08
TraesCS7D01G240500.3	Wheat	cytosol, plastid	32.2	5.07
TraesCS6A01G105000.1	Wheat	plastid	23.73	3.95
Zm00001d052851_P002	Maize	plastid	22.03	3.38

Protein Annotations

EnsemblPlants:Bra035613.1

EnsemblPlants:Bra035613.1-P

EnsemblPlantsGene:Bra035613

UniParc:UPI00025462A0

UniProt:M4F3G3

MapMan:35.2

Description

AT5G56290 (E=2e-011) PEX5, ATPEX5 | PEX5 (PEROXIN 5); peroxisome matrix targeting signal-1 binding / protein binding

Coordinates

chrA02:+:7286749..7288193

Molecular Weight (calculated)

12827.7 Da

IEP (calculated)

8.037

GRAVY (calculated)

0.409

Length

118 amino acids

Sequence
(BLAST)

001: MVFSLQGVRG FSFFWRCHLK LSGGACGVPG EVARGVVYAL ASSLRISASV LPSLVTALLC GDVQRINTLL CSCAWQYLRL SLSCASRQDL IEACEARNLD
101: VLQEEPSVSS REAMLFKP

Best Arabidopsis Sequence Match ( AT5G56290.1 )
(BLAST)

001: MAMRDLVNGG AACAVPGSSS SSNPLGALTN ALLGSSSKTQ ERLKEIPNAN RSGPRPQFYS EDQQIRSLPG SELDQPLLQP GAQGSEFFRG FRSVDQNGLG
101: AAWDEVQQGG PMPPMGPMFE PVQPTFEGPP QRVLSNFLHS FVESSRGGIP FRPAPVPVLG LSQSDKQCIR DRSSIMARHF FADRGEEFIN SQVNALLSSL
201: DIDDGIQARG HVPGRFRELD DYWNESQAVV KPNLHPADNW AAEFNQHGMD HGGPDSWVQS FEQQHGVNGW ATEFEQGQSQ LMSSQMRSMD MQNIAAMEQT
301: RKLAHTLSQD GNPKFQNSRF LQFVSKMSRG ELIIDENQVK QASAPGEWAT EYEQQYLGPP SWADQFANEK LSHGPEQWAD EFASGRGQQE TAEDQWVNEF
401: SKLNVDDWID EFAEGPVGDS SADAWANAYD EFLNEKNAGK QTSGVYVFSD MNPYVGHPEP MKEGQELFRK GLLSEAALAL EAEVMKNPEN AEGWRLLGVT
501: HAENDDDQQA IAAMMRAQEA DPTNLEVLLA LGVSHTNELE QATALKYLYG WLRNHPKYGA IAPPELADSL YHADIARLFN EASQLNPEDA DVHIVLGVLY
601: NLSREFDRAI TSFQTALQLK PNDYSLWNKL GATQANSVQS ADAISAYQQA LDLKPNYVRA WANMGISYAN QGMYKESIPY YVRALAMNPK ADNAWQYLRL
701: SLSCASRQDM IEACESRNLD LLQKEFPL

Arabidopsis Description

PEX5Peroxisome biogenesis protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMA3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.