Factsheet for TraesCS7B01G137000.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G438000.1
TraesCS3A01G438100.1
TraesCS3B01G472000.1
TraesCS3D01G430300.1
TraesCS3D01G430400.2
TraesCS4A01G184900.2
TraesCS4B01G133700.3
TraesCS4D01G128700.3
TraesCS5A01G133200.2
TraesCS5B01G131800.3
TraesCS5D01G141300.1
TraesCS7A01G259700.1
TraesCS7B01G157800.1
TraesCS7D01G260700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G56290.1	TraesCS7A01G259700.1	AT3G01910.1	21798944
AT5G56290.1	TraesCS7B01G157800.1	AT3G01910.1	21798944
AT5G56290.1	TraesCS7D01G260700.1	AT3G01910.1	21798944
AT5G56290.1	TraesCS4A01G184900.2	AT5G27600.1	16256065
AT5G56290.1	TraesCS4B01G133700.3	AT5G27600.1	16256065
AT5G56290.1	TraesCS4D01G128700.3	AT5G27600.1	16256065
AT5G56290.1	TraesCS5A01G133200.2	AT5G27600.1	16256065
AT5G56290.1	TraesCS5B01G131800.3	AT5G27600.1	16256065
AT5G56290.1	TraesCS5D01G141300.1	AT5G27600.1	16256065
AT5G56290.1	TraesCS3A01G438000.1	AT5G43280.1	24879895
AT5G56290.1	TraesCS3A01G438100.1	AT5G43280.1	24879895
AT5G56290.1	TraesCS3B01G472000.1	AT5G43280.1	24879895
AT5G56290.1	TraesCS3D01G430300.1	AT5G43280.1	24879895
AT5G56290.1	TraesCS3D01G430400.2	AT5G43280.1	24879895

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G241500.5	Wheat	cytosol, plastid	99.06	99.06
TraesCS7D01G240500.3	Wheat	cytosol, plastid	97.19	97.06
HORVU7Hr1G049220.10	Barley	plastid	95.45	95.45
Os08t0500100-02	Rice	cytosol	85.56	86.96
EES15431	Sorghum	plastid	83.69	85.29
Zm00001d031327_P009	Maize	plastid	83.29	84.19
CDY67858	Canola	cytosol	23.53	79.64
Zm00001d052851_P002	Maize	plastid	79.68	77.5
CDY66435	Canola	cytosol	10.96	70.69
GSMUA_Achr7P20310_001	Banana	plastid	66.98	66.09
VIT_19s0015g01940.t01	Wine grape	plastid	63.5	64.54
Solyc10g005650.2.1	Tomato	plastid	61.36	61.69
PGSC0003DMT400029209	Potato	cytosol, plastid	61.23	61.56
CDY49390	Canola	plastid	57.35	61.55
AT5G56290.1	Thale cress	plastid	59.09	60.71
KRH56371	Soybean	plastid	59.49	60.46
KRH62568	Soybean	plastid	59.36	60.16
CDY11941	Canola	plastid	58.56	60.0
Bra028938.1-P	Field mustard	plastid	58.42	59.86
CDY36789	Canola	plastid	58.42	57.88
Bra002826.1-P	Field mustard	plastid	57.89	56.82
CDY66434	Canola	cytosol, nucleus, plastid	18.18	48.06
CDY69423	Canola	plastid	27.67	47.7
CDY20736	Canola	extracellular	3.48	40.62
Bra035613.1-P	Field mustard	extracellular, mitochondrion	5.08	32.2

Protein Annotations

Gene3D:1.25.40.10	MapMan:23.4.1.1.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0006625
GO:GO:0006810	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733	GO:GO:0009987	GO:GO:0016043
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	PFAM:PF13181	PFAM:PF13414	PFAM:PF13432
PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR10130	PANTHER:PTHR10130:SF0	InterPro:PTS1R_family	SMART:SM00028
SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat	EnsemblPlantsGene:TraesCS7B01G137000	EnsemblPlants:TraesCS7B01G137000.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7B:+:169289724..169306225

Molecular Weight (calculated)

82451.2 Da

IEP (calculated)

4.568

GRAVY (calculated)

-0.611

Length

748 amino acids

Sequence
(BLAST)

001: MGTRHLITGQ NNCAPDGASS SNPFGALANT LLGQSNKAES LKGLPGASVS VPTTSDYSTA PLSTVPGSEN EFKQDQRPFA RGADFMRGGP ANDWVESFRP
101: PGHSAFGGPE ANFAEFEQIY NNAGPTLGPA LDGPPQRVLS GVLHSFLSSG RAGVPFQPVP VPALGLSEAD KQCIRDRSCI MARHILADQP EEYIQAQVNT
201: LLHSLDIDNS HRMKNPLHGP YPEMEEYWNQ SQSALRSGPM HNAANNWISE FGKQNNNPEG WITEFGKQNN NPEGWAHSFE QQYGPNGWAS EFEQHQSQMA
301: MDQMGGANMA NLAAMQQSRM LAETLSSNND PKFQNSKFFQ FVSKMSRGEL IIEDNQVKQG SASQSNGWAD EFQTQHNANA NSWADQFVHE ELSQGADNWV
401: SEFSSEQNQS GLKEKWVDEF SKLNMDDWTE EFSGGAFGES SADPWADEFQ NQLSASKSSG ASRGVYVFSE MNPYVGHPNP MQEGQELFRK GLLSEAALAL
501: EAEVLKNPDN AEGWRLLGVT HAENDDDQQA IAAMLRAQEA NPTNLEVLLA LGVSHTNELE QGEALRYLSR WLQNHPKYGA LAAPHQTDSP YGPDVVRLFN
601: EAAQMSPEDA DVHIVLGVLY NLSREYDKAI ASFKTALQLK PQDYSLWNKL GATQANSIQS ADAVLAYQQA LDLKPNYVRA WANMGISYAN QGLYEDSIRY
701: YVRAVSMNPK ADNAWQYLRI SLGNASRSDM IAACDSRNLD VLQKEFPL

Best Arabidopsis Sequence Match ( AT5G56290.1 )
(BLAST)

001: MAMRDLVNGG AACAVPGSSS SSNPLGALTN ALLGSSSKTQ ERLKEIPNAN RSGPRPQFYS EDQQIRSLPG SELDQPLLQP GAQGSEFFRG FRSVDQNGLG
101: AAWDEVQQGG PMPPMGPMFE PVQPTFEGPP QRVLSNFLHS FVESSRGGIP FRPAPVPVLG LSQSDKQCIR DRSSIMARHF FADRGEEFIN SQVNALLSSL
201: DIDDGIQARG HVPGRFRELD DYWNESQAVV KPNLHPADNW AAEFNQHGMD HGGPDSWVQS FEQQHGVNGW ATEFEQGQSQ LMSSQMRSMD MQNIAAMEQT
301: RKLAHTLSQD GNPKFQNSRF LQFVSKMSRG ELIIDENQVK QASAPGEWAT EYEQQYLGPP SWADQFANEK LSHGPEQWAD EFASGRGQQE TAEDQWVNEF
401: SKLNVDDWID EFAEGPVGDS SADAWANAYD EFLNEKNAGK QTSGVYVFSD MNPYVGHPEP MKEGQELFRK GLLSEAALAL EAEVMKNPEN AEGWRLLGVT
501: HAENDDDQQA IAAMMRAQEA DPTNLEVLLA LGVSHTNELE QATALKYLYG WLRNHPKYGA IAPPELADSL YHADIARLFN EASQLNPEDA DVHIVLGVLY
601: NLSREFDRAI TSFQTALQLK PNDYSLWNKL GATQANSVQS ADAISAYQQA LDLKPNYVRA WANMGISYAN QGMYKESIPY YVRALAMNPK ADNAWQYLRL
701: SLSCASRQDM IEACESRNLD LLQKEFPL

Arabidopsis Description

PEX5Peroxisome biogenesis protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMA3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.