Factsheet for TraesCS4D01G128700.3

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 3
cytosol 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G105000.1
TraesCS7A01G241500.5
TraesCS7B01G137000.2
TraesCS7D01G240500.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27600.1	TraesCS6A01G105000.1	AT5G56290.1	16256065
AT5G27600.1	TraesCS7A01G241500.5	AT5G56290.1	16256065
AT5G27600.1	TraesCS7B01G137000.2	AT5G56290.1	16256065
AT5G27600.1	TraesCS7D01G240500.3	AT5G56290.1	16256065

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G184900.2	Wheat	peroxisome	98.56	98.56
TraesCS4B01G133700.3	Wheat	peroxisome	98.42	98.42
HORVU4Hr1G025820.9	Barley	peroxisome, plastid	94.11	87.33
TraesCS5D01G141300.1	Wheat	peroxisome	83.91	83.19
GSMUA_Achr8P24080_001	Banana	mitochondrion	72.99	74.71
VIT_05s0020g03080.t01	Wine grape	peroxisome	74.71	74.61
Solyc01g099100.2.1	Tomato	plastid	73.71	73.71
Bra001177.1-P	Field mustard	plastid	72.7	72.7
CDX74115	Canola	plastid	72.56	72.56
AT3G05970.1	Thale cress	plastid	72.99	72.47
CDY49993	Canola	mitochondrion	72.27	72.27
KRG91264	Soybean	peroxisome	72.41	72.21
CDY05217	Canola	plastid	70.98	71.91
Bra020793.1-P	Field mustard	plastid	64.94	71.86
CDY27725	Canola	plastid	70.83	71.76
KRH35544	Soybean	endoplasmic reticulum, mitochondrion	71.55	71.55
Solyc09g075790.2.1	Tomato	peroxisome	64.51	71.5
VIT_14s0128g00720.t01	Wine grape	peroxisome	64.08	70.46
AT5G27600.1	Thale cress	peroxisome, plastid	70.26	69.86
CDX80638	Canola	peroxisome	69.68	69.38
Bra009951.1-P	Field mustard	peroxisome	69.54	69.34
CDX86151	Canola	peroxisome	69.54	69.24
CDX92843	Canola	peroxisome	20.98	68.22
Solyc09g075770.1.1	Tomato	peroxisome	66.81	66.62
PGSC0003DMT400063438	Potato	peroxisome	7.61	57.61
CDY65251	Canola	peroxisome	17.82	52.99
KRH13185	Soybean	cytosol	37.21	41.44
TraesCS3D01G237900.1	Wheat	peroxisome	38.22	40.43
TraesCS5D01G144200.2	Wheat	peroxisome	38.07	39.73
TraesCS5D01G420300.1	Wheat	golgi	36.93	38.82
TraesCS7D01G110700.1	Wheat	peroxisome	36.06	38.62
TraesCS1D01G077600.1	Wheat	golgi	35.78	37.16
TraesCS4D01G108300.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	30.46	30.42
TraesCS5D01G129800.1	Wheat	golgi	30.03	29.94
TraesCS5D01G174000.1	Wheat	peroxisome	30.03	28.71
GSMUA_AchrUn_...	Banana	peroxisome	4.6	25.4
TraesCS5D01G533700.1	Wheat	plastid	21.98	20.87
TraesCS5D01G533800.3	Wheat	mitochondrion, plastid	21.98	20.7

Protein Annotations

EnsemblPlants:TraesCS4D01G128700.3	EnsemblPlantsGene:TraesCS4D01G128700	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF17
PFAM:PF00501	PFAM:PF13193	ScanProsite:PS00455	SEG:seg	SUPFAM:SSF56801	TIGR:cd05927
MapMan:5.7.3.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:113152120..113165334

Molecular Weight (calculated)

76763.2 Da

IEP (calculated)

7.026

GRAVY (calculated)

-0.100

Length

696 amino acids

Sequence
(BLAST)

001: MDATDRRLRA VSAHLQPQAT AARRTSDSLA PNPTAGEYAH VLGYSAVLPE KLQTGKWNVY RSAHSPITLI DRFSDYPDIG TLHDNFVNAV ETFRDCRYLG
101: TRVHSDGTIG DYKWMTYGEA GTSRAAIGSG LICHGIPKGA RVGLYFINRP EWTIVDNACS AYSYVSVPLY DTLGPDAVQF IVNHASVEAI FCVPETLRTL
201: LSFITQMPCV RLIVVVGGVD ENMPSSPAAA GMEIITYSML HRQGHMSPQP FRPPKPEDVA TICYTSGTTG TPKGAVLSHA NFIANVAGQD LGVKFYPSDV
301: YISYLPLAHI YERTNQIWLV HRGAAVGFYQ GDNLKLMDDL NTLKPTVFAS VPRLYNKIYA AITNAVKESG GLKERLFHAA YNAKRQAIIN GRNPSPVWDK
401: LVFNKIKARL GGRVRVMSSG ASPLSPDVME FLRICFGGDI LEGYGMTETS CVITLMDVGD ISIGHVGSPN PACEVKLVDV PEMNYTSEDQ PYPRGEICAR
501: GPIIFQGYYK DEVQTREVID EDSWLHTGDI GLWLPGGRLK IIDRKKNIFK LAQGEYIAPE KIENVYAKCK FIAQCFVYGD SFNSCLVAVV AVEPEVLKSW
601: AALEGIQYED LRQLCSDPRA RAAVLADMDS IGKEAQLRGF EFVKAVTLVA EPFTLENGLL TPTFKVKRPQ AKAYFAKEIT TMYAQLLDAE SARPKL

Best Arabidopsis Sequence Match ( AT1G49430.1 )
(BLAST)

001: MSLAADNVLL VEEGRPATAE HPSAGPVYRC KYAKDGLLDL PTDIDSPWQF FSEAVKKYPN EQMLGQRVTT DSKVGPYTWI TYKEAHDAAI RIGSAIRSRG
101: VDPGHCCGIY GANCPEWIIA MEACMSQGIT YVPLYDSLGV NAVEFIINHA EVSLVFVQEK TVSSILSCQK GCSSNLKTIV SFGEVSSTQK EEAKNQCVSL
201: FSWNEFSLMG NLDEANLPRK RKTDICTIMY TSGTTGEPKG VILNNAAISV QVLSIDKMLE VTDRSCDTSD VFFSYLPLAH CYDQVMEIYF LSRGSSVGYW
301: RGDIRYLMDD VQALKPTVFC GVPRVYDKLY AGIMQKISAS GLIRKKLFDF AYNYKLGNMR KGFSQEEASP RLDRLMFDKI KEALGGRAHM LLSGAAPLPR
401: HVEEFLRIIP ASNLSQGYGL TESCGGSFTT LAGVFSMVGT VGVPMPTVEA RLVSVPEMGY DAFSADVPRG EICLRGNSMF SGYHKRQDLT DQVLIDGWFH
501: TGDIGEWQED GSMKIIDRKK NIFKLSQGEY VAVENLENTY SRCPLIAQIW VYGNSFESFL VGVVVPDRKA IEDWAKLNYQ SPNDFESLCQ NLKAQKYFLD
601: ELNSTAKQYQ LKGFEMLKAI HLEPNPFDIE RDLITPTFKL KRPQLLQHYK GIVDQLYSEA KRSMA

Arabidopsis Description

LACS2Long chain acyl-CoA synthetase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIA9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.