CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

plastid 1
cytosol 2
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

peroxisome: 19073762
nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 19073762 doi

Y Arai, M Hayashi, M Nishimura

Department of Cell Biology, National Institute for Basic Biology, Okazaki 444-8585 Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH35544	Soybean	endoplasmic reticulum, mitochondrion	96.28	96.55
VIT_05s0020g03080.t01	Wine grape	peroxisome	81.81	81.92
AT3G05970.1	Thale cress	plastid	76.79	76.46
Bra020793.1-P	Field mustard	plastid	68.62	76.15
CDX74115	Canola	plastid	75.93	76.15
CDY49993	Canola	mitochondrion	75.93	76.15
Bra001177.1-P	Field mustard	plastid	75.79	76.01
CDY27725	Canola	plastid	74.36	75.55
CDY05217	Canola	plastid	74.21	75.4
CDX92843	Canola	peroxisome	22.49	73.36
Os12t0143900-01	Rice	peroxisome	73.64	72.7
EES15543	Sorghum	peroxisome	70.77	72.43
TraesCS4D01G128700.3	Wheat	mitochondrion	72.21	72.41
TraesCS4B01G133700.3	Wheat	peroxisome	72.21	72.41
TraesCS4A01G184900.2	Wheat	peroxisome	72.21	72.41
Zm00001d023238_P002	Maize	plasma membrane	71.63	72.36
TraesCS5B01G131800.3	Wheat	peroxisome	72.49	72.08
TraesCS5D01G141300.1	Wheat	peroxisome	71.92	71.51
TraesCS5A01G133200.2	Wheat	peroxisome	71.92	71.51
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	70.92	71.12
Os11t0147000-01	Rice	peroxisome	71.92	70.8
KXG27718	Sorghum	peroxisome	70.63	70.73
HORVU5Hr1G040740.17	Barley	peroxisome	70.49	68.81
HORVU4Hr1G025820.9	Barley	peroxisome, plastid	70.34	65.47
CDY65251	Canola	peroxisome	18.62	55.56
PGSC0003DMT400063438	Potato	peroxisome	7.16	54.35
KRH13185	Soybean	cytosol	47.71	53.28
KRH48841	Soybean	peroxisome	14.9	47.49
KRH49531	Soybean	peroxisome	37.97	40.15
KRH57847	Soybean	cytosol	5.01	39.77
KRG89197	Soybean	peroxisome	37.54	39.7
KRH29538	Soybean	peroxisome	37.25	39.63
KRH24533	Soybean	peroxisome	37.11	39.48
KRH60037	Soybean	peroxisome	36.25	38.05
KRH69184	Soybean	peroxisome	35.67	37.73
KRH31765	Soybean	peroxisome	35.53	37.58
KRH27846	Soybean	peroxisome	35.53	37.41
KRH77642	Soybean	endoplasmic reticulum	35.67	37.11
KRH26020	Soybean	cytosol	4.73	37.08
KRH68292	Soybean	endoplasmic reticulum	34.67	36.56
KRG96554	Soybean	peroxisome	34.38	36.25
KRG94065	Soybean	vacuole	8.74	33.33
KRH66241	Soybean	peroxisome	16.62	32.95
KRH53234	Soybean	mitochondrion	32.09	32.28
KRG89997	Soybean	endoplasmic reticulum	30.95	32.05
KRH41306	Soybean	peroxisome	11.6	31.64
KRH18736	Soybean	peroxisome, plastid	30.8	30.89
KRH17725	Soybean	peroxisome	31.52	30.34
KRG89995	Soybean	endoplasmic reticulum, mitochondrion	31.52	30.34
KRH16338	Soybean	plastid, vacuole	27.08	29.21
GSMUA_AchrUn_...	Banana	peroxisome	4.44	24.6
KRH31560	Soybean	plastid	23.21	22.5
KRH58837	Soybean	plastid	23.07	21.96

Protein Annotations

EntrezGene:100301904	Gene3D:3.40.50.12780	MapMan:5.7.3.1	EMBL:ACUP02012673	InterPro:AMP-bd_C	InterPro:AMP-binding_CS
InterPro:AMP-dep_Synth/Lig	EnsemblPlantsGene:GLYMA_20G143900	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
UniProt:I1NGC4	EnsemblPlants:KRG91264	ProteinID:KRG91264	ProteinID:KRG91264.1	PFAM:PF00501	PFAM:PF13193
ScanProsite:PS00455	PANTHER:PTHR43272	PANTHER:PTHR43272:SF17	SUPFAM:SSF56801	UniParc:UPI000233E1CE	SEG:seg

Description

hypothetical protein

Coordinates

chr20:+:38246270..38255477

Molecular Weight (calculated)

76912.2 Da

IEP (calculated)

7.193

GRAVY (calculated)

-0.134

Length

698 amino acids

Sequence
(BLAST)

001: MDHTPAAQRR LKAIHAHLTA TATADDSPSH LESNTTAGEF FSEQGYSVVL PEKLQTGKWN VYRSVRSPLQ LVTKFPNHPE IGTMHDNFVR SVDTFRDYKY
101: LGTRVRVDGT VGEYKWMTYG EAGTARSAIG SGLIYYGIQK GSSIGLYFIN RPEWLIVDHA CSAYSFVSVP LYDTLGPDAV KYIVSHAVVQ VIFCVPETLN
201: LLLSYLSDIP TVRLIVVVGG MDDQIPSVPS STGVQVITYS KLLNQGRSNL QPFCPPKPDD IATICYTSGT TGTPKGAILT HGNFIASVAG STMDEKFGPS
301: DVYISYLPLA HIYERANQVM TVHFGIAVGF YQGDSMKLMD DIAALRPTVF CSVPRLYNRI YAGITNAVKT SGGLKERLFN AAYNAKRQAL LHGKNPSPMW
401: DRLVFNKIKE KLGGRVRFMA SGASPLSPDI MEFLKICFGC RVTEGYGMTE STCVISCIDE GDKLGGHVGS PNLACEIKLV DVPEMNYTSD DQPNPRGEIC
501: VRGPLVFRGY HKDEAQTRDV IDEDGWLHTG DIGTWLPGGR LKIIDRKKNI FKLAQGEYIA PEKIENVYAK CKFVAQCFVY GDSLNASLVA VVSVDHDNLK
601: AWAASEGIMY NDLAQLCNDP KARAAVLAEM DAAGREAQLR GFEFVKAVTL VLEPFTLENG LLTPTFKVKR PQAKEYFAKA ISDMYSELSR TDTSQKTL

Best Arabidopsis Sequence Match ( AT3G05970.1 )
(BLAST)

001: MDSSSSSSSA AARRRINAIH SHLVTSSRSS PLLRSNPTAG EFCLDNGYSV VLPEKLNTGS WNVYRSAKSP FKLVSRFPDH PDIATLHDNF EHAVHDFRDY
101: KYLGTRVRVD GTVGDYKWMT YGEAGTARTA LGSGLVHHGI PMGSSVGIYF INRPEWLIVD HACSSYSYVS VPLYDTLGPD AVKFIVNHAT VQAIFCVAET
201: LNSLLSCLSE MPSVRLVVVV GGLIESLPSL PSSSGVKVVS YSVLLNQGRS NPQRFFPPKP DDVATICYTS GTTGTPKGVV LTHANLIANV AGSSFSVKFF
301: SSDVYISYLP LAHIYERANQ ILTVYFGVAV GFYQGDNMKL LDDLAALRPT VFSSVPRLYN RIYAGIINAV KTSGGLKERL FNAAYNAKKQ ALLNGKSASP
401: IWDRLVFNKI KDRLGGRVRF MTSGASPLSP EVMEFLKVCF GGRVTEGYGM TETSCVISGM DEGDNLTGHV GSPNPACEVK LVDVPEMNYT SADQPHPRGE
501: ICVRGPIIFT GYYKDEIQTK EVIDEDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY AKCKFVGQCF IYGDSFNSSL VAVVSVDPDV
601: LKSWAASEGI KGGDLRELCN NPRVKAAVLS DMDTVGREAQ LRGFEFAKAV TLVLEPFTLE NGLLTPTFKI KRPQAKEYFA EAITNMYKEL GASDPSANRG
701: L

Arabidopsis Description

LACS6Long chain acyl-CoA synthetase 6, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.