CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

cytosol 2
peroxisome 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89995	Soybean	endoplasmic reticulum, mitochondrion	88.13	81.93
KRH17725	Soybean	peroxisome	87.54	81.38
VIT_12s0057g01270.t01	Wine grape	peroxisome	73.44	68.85
CDY15082	Canola	peroxisome	71.51	67.32
CDY66248	Canola	peroxisome	71.96	67.27
Bra013210.1-P	Field mustard	peroxisome	71.81	67.13
AT2G04350.1	Thale cress	peroxisome	70.33	65.83
Solyc07g045290.2.1	Tomato	plastid	70.33	65.29
PGSC0003DMT400000868	Potato	peroxisome	70.77	65.25
PGSC0003DMT400044860	Potato	peroxisome	70.18	65.15
Os05t0317200-01	Rice	plastid	69.29	64.33
Solyc12g009040.1.1	Tomato	plastid	68.25	64.07
KXG27640	Sorghum	peroxisome	68.4	63.5
Zm00001d005019_P004	Maize	plasma membrane	67.95	63.09
TraesCS5B01G166400.1	Wheat	golgi	67.8	62.77
Zm00001d052399_P007	Maize	peroxisome	67.51	62.67
TraesCS5D01G174000.1	Wheat	peroxisome	67.66	62.64
TraesCS5A01G169600.1	Wheat	golgi	67.36	62.36
HORVU5Hr1G052100.13	Barley	peroxisome	67.95	62.31
KRH18736	Soybean	peroxisome, plastid	63.06	61.06
KRH53234	Soybean	mitochondrion	62.02	60.23
KRH16338	Soybean	plastid, vacuole	54.75	57.03
TraesCS3B01G570800.1	Wheat	peroxisome	14.84	48.78
KRH77642	Soybean	endoplasmic reticulum	33.38	33.53
KRH27846	Soybean	peroxisome	32.79	33.33
KRH48841	Soybean	peroxisome	10.68	32.88
KRH60037	Soybean	peroxisome	32.34	32.78
KRG89197	Soybean	peroxisome	30.56	31.21
KRH24533	Soybean	peroxisome	30.27	31.1
KRG91264	Soybean	peroxisome	32.05	30.95
KRH31765	Soybean	peroxisome	30.27	30.91
KRH49531	Soybean	peroxisome	30.27	30.91
KRH35544	Soybean	endoplasmic reticulum, mitochondrion	31.9	30.89
KRH69184	Soybean	peroxisome	29.97	30.61
KRH29538	Soybean	peroxisome	29.53	30.34
KRG96554	Soybean	peroxisome	29.38	29.91
KRH68292	Soybean	endoplasmic reticulum	28.78	29.31
KRH41306	Soybean	peroxisome	10.83	28.52
KRG94065	Soybean	vacuole	7.72	28.42
KRH66241	Soybean	peroxisome	14.84	28.41
KRH57847	Soybean	cytosol	3.12	23.86
KRH26020	Soybean	cytosol	3.12	23.6
KRH31560	Soybean	plastid	23.29	21.81
KRH58837	Soybean	plastid	23.44	21.56
KRH13185	Soybean	cytosol	17.8	19.2

Protein Annotations

EMBL:ACUP02012488	EnsemblPlants:KRG89997	EnsemblPlantsGene:GLYMA_20G060300	EntrezGene:100797826	Gene3D:3.40.50.12780	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272
PANTHER:PTHR43272:SF30	PFAM:PF00501	ProteinID:KRG89997	ProteinID:KRG89997.1	ScanProsite:PS00455	SEG:seg
SUPFAM:SSF56801	UniParc:UPI000233DD24	UniProt:I1NDV2	MapMan:50.6.2	:	:

Description

hypothetical protein

Coordinates

chr20:-:18599665..18608576

Molecular Weight (calculated)

74321.4 Da

IEP (calculated)

6.972

GRAVY (calculated)

-0.092

Length

674 amino acids

Sequence
(BLAST)

001: MVDHGGVPVE VGGEAGYAVR NARKTELVEA PWKEAPTMAH LFEQSCDKYS HNPFLGTRKL IRKEFVTSSD GRKFEKLHLG NYEWETYGEV FSRVSNFASG
101: LLKLGHSADS RVAIFSDTRA EWLIALQGCF RQNVTVVTIY ATLGEDALVY SLNETEVSTL ICESKLLKKL DAIRSRLTSV QNVIYFEDDS NDEDAFSGSL
201: SNWTIASVSE VEKLGKESPV QPSLPSKNDI AVIMYTSGST GLPKGVMITH GNIVATTAAV MTIIPNLGSK DVYMAYLPLA HVFEMAAESV MLAVGCAIGY
301: SSILTLTDSS SKIKQGTKGD ANVLKPTLMA AVPAIVDRIR DGVVKKVEEK GGLVKNLFHF AYQRRLSAVK GSWLGAWGLE KLVWDTIVFK KIRDAIGGRL
401: RYMLCGGAPL SGDSQHFINV CMGAIIGQAY GLTETFAGAA FSEWYDRKVG RVGPPLPCSY IKLVSWEEGG YLTSDKPMPR GEIVVGGFSV TAGYFKNQEK
501: TNEVFKVDEH GMRWFYTGDI GQFHPDGCLE IIDRKKDIVK LQHGEYVSLG KVEAALSSCD YVDNIMVYAD PFYDYCVALV VVSYQSLEKW AEQAGIEHRN
601: FSDLCNKPET ITEVLQAISK VAKATKLVKS EIPAKIKLLP DPWTPESGLV TNALKIKREQ LKAKFKDDLL KLYA

Best Arabidopsis Sequence Match ( AT1G77590.1 )
(BLAST)

001: MIPYAAGVIV PLALTFLVQK SKKEKKRGVV VDVGGEPGYA IRNHRFTEPV SSHWEHISTL PELFEISCNA HSDRVFLGTR KLISREIETS EDGKTFEKLH
101: LGDYEWLTFG KTLEAVCDFA SGLVQIGHKT EERVAIFADT REEWFISLQG CFRRNVTVVT IYSSLGEEAL CHSLNETEVT TVICGSKELK KLMDISQQLE
201: TVKRVICMDD EFPSDVNSNW MATSFTDVQK LGRENPVDPN FPLSADVAVI MYTSGSTGLP KGVMMTHGNV LATVSAVMTI VPDLGKRDIY MAYLPLAHIL
301: ELAAESVMAT IGSAIGYGSP LTLTDTSNKI KKGTKGDVTA LKPTIMTAVP AILDRVRDGV RKKVDAKGGL SKKLFDFAYA RRLSAINGSW FGAWGLEKLL
401: WDVLVFRKIR AVLGGQIRYL LSGGAPLSGD TQRFINICVG APIGQGYGLT ETCAGGTFSE FEDTSVGRVG APLPCSFVKL VDWAEGGYLT SDKPMPRGEI
501: VIGGSNITLG YFKNEEKTKE VYKVDEKGMR WFYTGDIGRF HPDGCLEIID RKKDIVKLQH GEYVSLGKVE AALSISPYVE NIMVHADSFY SYCVALVVAS
601: QHTVEGWASK QGIDFANFEE LCTKEQAVKE VYASLVKAAK QSRLEKFEIP AKIKLLASPW TPESGLVTAA LKLKRDVIRR EFSEDLTKLY A

Arabidopsis Description

LACS9Long chain acyl-CoA synthetase 9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAP8]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.