Factsheet for VIT_12s0057g01270.t01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	cytosol
EpiLoc:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89995	Soybean	endoplasmic reticulum, mitochondrion	74.69	74.07
Solyc07g045290.2.1	Tomato	plastid	74.41	73.69
KRH17725	Soybean	peroxisome	74.27	73.66
PGSC0003DMT400044860	Potato	peroxisome	74.27	73.55
KRG89997	Soybean	endoplasmic reticulum	68.85	73.44
PGSC0003DMT400000868	Potato	peroxisome	73.71	72.5
Solyc12g009040.1.1	Tomato	plastid	71.63	71.73
CDY15082	Canola	peroxisome	70.51	70.81
Bra013210.1-P	Field mustard	peroxisome	70.93	70.74
CDY66248	Canola	peroxisome	70.65	70.46
Os05t0317200-01	Rice	plastid	71.07	70.39
AT2G04350.1	Thale cress	peroxisome	70.38	70.28
KXG27640	Sorghum	peroxisome	70.51	69.83
Zm00001d052399_P007	Maize	peroxisome	69.12	68.46
Zm00001d005019_P004	Maize	plasma membrane	68.98	68.32
TraesCS5B01G166400.1	Wheat	golgi	69.12	68.27
HORVU5Hr1G052100.13	Barley	peroxisome	69.68	68.16
TraesCS5D01G174000.1	Wheat	peroxisome	68.85	67.99
TraesCS5A01G169600.1	Wheat	golgi	68.57	67.72
VIT_18s0001g02810.t01	Wine grape	vacuole	61.61	63.56
TraesCS3B01G570800.1	Wheat	peroxisome	15.86	55.61
VIT_02s0025g01410.t01	Wine grape	peroxisome	28.79	31.27
VIT_05s0020g03080.t01	Wine grape	peroxisome	30.04	30.99
VIT_03s0063g01880.t01	Wine grape	peroxisome	28.09	30.65
VIT_14s0128g00720.t01	Wine grape	peroxisome	26.98	30.65
VIT_07s0005g01790.t01	Wine grape	peroxisome	28.09	30.51
VIT_08s0032g00050.t01	Wine grape	plastid	22.39	22.05

Protein Annotations

EntrezGene:100252885	wikigene:100252885	Gene3D:3.40.50.12780	MapMan:50.6.2	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
ProteinID:CBI28468	ProteinID:CBI28468.3	UniProt:D7TD95	EMBL:FN595759	GO:GO:0001676	GO:GO:0003674
GO:GO:0003824	GO:GO:0004467	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005794	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009536
GO:GO:0009941	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100252885	wikigene:LOC100252885
PFAM:PF00501	ScanProsite:PS00455	PANTHER:PTHR43272	PANTHER:PTHR43272:SF30	SUPFAM:SSF56801	TMHMM:TMhelix
UniParc:UPI00015CA640	ArrayExpress:VIT_12s0057g01270	EnsemblPlantsGene:VIT_12s0057g01270	EnsemblPlants:VIT_12s0057g01270.t01	unigene:Vvi.8654	RefSeq:XP_002267417
RefSeq:XP_002267417.1	RefSeq:XP_010657490.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr12:-:10009179..10015729

Molecular Weight (calculated)

78855.3 Da

IEP (calculated)

6.965

GRAVY (calculated)

-0.066

Length

719 amino acids

Sequence
(BLAST)

001: MGDSEGGFSN PSILENLVYG VVGAVVFGVL VPLLFSIILV GKKKVKQRGV PVEVGDELGF AMRNSRYTEL VEVPWEGATT IAALFEQSCG KHSRDPFLGT
101: RKLINREFIT AGDGRKFEKV HLGEYQWETY EEIFNRACNF ASGLIKLGHN VDSHVAIFSD TQAEWLIAFQ GCFRQNITIV TIYASLGEDA LIHSLNETQI
201: STLICDSKQL KKLASISSRL EMIKNVIYFD NAASDSDFSG DMSNWTVSTF SEVEKLGKEN PVHPRLPSKT DIAVVMYTSG STGLPKGVMM THGNIVATAA
301: AVMTVIPELG SKDIYLAYLP LAHVFELAAE TVMMAAGCAI GYGSALTLTD TSNKIQKGTK GDASMLKPTL MATVPAILDR VRDGVLKQVE AKGGLVKKLF
401: NIGYKRRLAA VEGSCFGAWG LERVFWDAIV FKKIRSLLGG HIRFMLCGGA PLSGDTQRFI NICMGAPIGQ GYGLTETCAG ATFTEPDDPN VGHVGPPLPC
501: AYIKLVSWEE GGYKTSDKPM PRGEVVVGGY SITAGYFNNE EKTKEAYKVD ERGMRWFYTG DIGQFQPNGC LEIIDRKKDI VKLQHGEYIS LGKVEAALMG
601: SNYVDNIMVY ADPLHNYCVA LVVPSHQVLE KWAEAAGIKY KDFSELCNKE ETVGEVQQSL SKVAKAAKLD KFETPAKIKL VAEQWTPESG LVTAALKLKR
701: EQIKTKFKDD LVKLYERSM

Best Arabidopsis Sequence Match ( AT2G04350.1 )
(BLAST)

001: MEDSGVNPMD SPSKGSDFGV YGIIGGGIVA LLVPVLLSVV LNGTKKGKKR GVPIKVGGEE GYTMRHARAP ELVDVPWEGA ATMPALFEQS CKKYSKDRLL
101: GTREFIDKEF ITASDGRKFE KLHLGEYKWQ SYGEVFERVC NFASGLVNVG HNVDDRVAIF SDTRAEWFIA FQGCFRQSIT VVTIYASLGE EALIYSLNET
201: RVSTLICDSK QLKKLSAIQS SLKTVKNIIY IEEDGVDVAS SDVNSMGDIT VSSISEVEKL GQKNAVQPIL PSKNGVAVIM FTSGSTGLPK GVMITHGNLV
301: ATAAGVMKVV PKLDKNDTYI AYLPLAHVFE LEAEIVVFTS GSAIGYGSAM TLTDTSNKVK KGTKGDVSAL KPTIMTAVPA ILDRVREGVL KKVEEKGGMA
401: KTLFDFAYKR RLAAVDGSWF GAWGLEKMLW DALVFKKIRA VLGGHIRFML VGGAPLSPDS QRFINICMGS PIGQGYGLTE TCAGATFSEW DDPAVGRVGP
501: PLPCGYVKLV SWEEGGYRIS DKPMPRGEIV VGGNSVTAGY FNNQEKTDEV YKVDEKGTRW FYTGDIGRFH PDGCLEVIDR KKDIVKLQHG EYVSLGKVEA
601: ALGSSNYVDN IMVHADPINS YCVALVVPSR GALEKWAEEA GVKHSEFAEL CEKGEAVKEV QQSLTKAGKA AKLEKFELPA KIKLLSEPWT PESGLVTAAL
701: KIKREQIKSK FKDELSKLYA

Arabidopsis Description

LACS8Long chain acyl-CoA synthetase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJD4]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.