Factsheet for TraesCS5A01G169600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

peroxisome 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	peroxisome, plastid
MultiLoc:	peroxisome
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G052100.13	Barley	peroxisome	96.02	95.1
Os05t0317200-01	Rice	plastid	87.77	88.02
KXG27640	Sorghum	peroxisome	86.26	86.5
Zm00001d052399_P007	Maize	peroxisome	83.93	84.16
Zm00001d005019_P004	Maize	plasma membrane	83.38	83.61
Solyc07g045290.2.1	Tomato	plastid	69.51	69.7
PGSC0003DMT400044860	Potato	peroxisome	69.09	69.28
VIT_12s0057g01270.t01	Wine grape	peroxisome	67.72	68.57
PGSC0003DMT400000868	Potato	peroxisome	68.82	68.54
CDY15082	Canola	peroxisome	66.48	67.6
KRG89995	Soybean	endoplasmic reticulum, mitochondrion	67.31	67.59
Solyc12g009040.1.1	Tomato	plastid	66.62	67.55
KRG89997	Soybean	endoplasmic reticulum	62.36	67.36
KRH17725	Soybean	peroxisome	66.76	67.03
CDY66248	Canola	peroxisome	66.35	66.99
Bra013210.1-P	Field mustard	peroxisome	66.21	66.85
TraesCS3B01G570800.1	Wheat	peroxisome	18.54	65.85
AT2G04350.1	Thale cress	peroxisome	64.97	65.69
TraesCS4A01G207000.1	Wheat	golgi	60.99	63.43
TraesCS5A01G117700.1	Wheat	endoplasmic reticulum, vacuole	59.48	62.03
TraesCS3A01G237700.3	Wheat	peroxisome	30.49	33.08
TraesCS7A01G115900.1	Wheat	peroxisome	28.43	32.81
TraesCS5A01G411500.2	Wheat	golgi	29.53	32.38
TraesCS5A01G148700.1	Wheat	peroxisome	28.98	31.63
TraesCS1A01G075000.1	Wheat	golgi	28.02	30.45
TraesCS5A01G133200.2	Wheat	peroxisome	28.85	29.91
TraesCS4A01G184900.2	Wheat	peroxisome	28.57	29.89
TraesCS4A01G336500.2	Wheat	mitochondrion, plastid	21.57	21.13
TraesCS4A01G336400.4	Wheat	plastid	21.15	20.98

Protein Annotations

Gene3D:3.30.300.30	Gene3D:3.40.50.12780	MapMan:50.6.2	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	GO:GO:0003674
GO:GO:0003824	GO:GO:0004467	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005783	GO:GO:0005794	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009536
GO:GO:0009941	GO:GO:0009987	PFAM:PF00501	ScanProsite:PS00455	PANTHER:PTHR43272	PANTHER:PTHR43272:SF30
SUPFAM:SSF56801	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5A01G169600	EnsemblPlants:TraesCS5A01G169600.1	TIGR:cd05927	:

Description

No Description!

Coordinates

chr5A:-:362175553..362188945

Molecular Weight (calculated)

79931.7 Da

IEP (calculated)

8.383

GRAVY (calculated)

-0.055

Length

728 amino acids

Sequence
(BLAST)

001: MIMATITGEN PNMSILQRLT TSDLPLVKEY GLPGVIGALL LAIVIPIFLS SMFSKKVKKR AVQVDVGGEA GLAMRNSRFS SLIQVPWEGA TTMAALFEMA
101: SKKYTQHRCL GTRKLISSEF IEAADGRKFE KLHLGEYQWD SYAEAFKRAC NFASGLIKMG HQLDSRAAIF SDTRAEWIIA AQGCFRQNLT VVTIYASLGE
201: DALVHSLNET QVSTLICDSK QLKKLPAVSS KLQSLKHVIY IEDEPVEADT LNQLKHLTTL SFNAVEELGK TSHADARLPS STDTAVIMYT SGSTGLPKGV
301: MITHGNMVAT IAAVRTTIPN LGTSDVYLAY LPLAHVFELA AESVMLASGV AIGYGSALTM TDASNKIKKG TKGDVSVLKP TLMISVPAIL DRIRDAVFKK
401: VAEKGGITKK LFDVAYKRNL GAIEGSWTGS WAPERFIWNS IIFKPIRAML GGHIRFILCG GAPLSSETQR FINICLGVPV GQGYGLTETC AGAAFSEWDD
501: TSVGRVGPPL PCCYVKLISW EEGGYRISDS PRPRGEVVIG GHSITKGYFN NEAKTNEVYK VDERGIRWFY TGDIGQFHPD GCVEIIDRKK DIVKLQHGEY
601: VSLGKVESAL QTSNYVDNIM VYADPFHSYC VALVVPPHQA LEKWAQNSGI SYKDIEELCH NDQAIKEVQQ SLSKAAKAAR LEKFEIPARI ILLPEPWTPE
701: SGLVTAALKL KREQLKAKFK DDLNKLYQ

Best Arabidopsis Sequence Match ( AT2G04350.1 )
(BLAST)

001: MEDSGVNPMD SPSKGSDFGV YGIIGGGIVA LLVPVLLSVV LNGTKKGKKR GVPIKVGGEE GYTMRHARAP ELVDVPWEGA ATMPALFEQS CKKYSKDRLL
101: GTREFIDKEF ITASDGRKFE KLHLGEYKWQ SYGEVFERVC NFASGLVNVG HNVDDRVAIF SDTRAEWFIA FQGCFRQSIT VVTIYASLGE EALIYSLNET
201: RVSTLICDSK QLKKLSAIQS SLKTVKNIIY IEEDGVDVAS SDVNSMGDIT VSSISEVEKL GQKNAVQPIL PSKNGVAVIM FTSGSTGLPK GVMITHGNLV
301: ATAAGVMKVV PKLDKNDTYI AYLPLAHVFE LEAEIVVFTS GSAIGYGSAM TLTDTSNKVK KGTKGDVSAL KPTIMTAVPA ILDRVREGVL KKVEEKGGMA
401: KTLFDFAYKR RLAAVDGSWF GAWGLEKMLW DALVFKKIRA VLGGHIRFML VGGAPLSPDS QRFINICMGS PIGQGYGLTE TCAGATFSEW DDPAVGRVGP
501: PLPCGYVKLV SWEEGGYRIS DKPMPRGEIV VGGNSVTAGY FNNQEKTDEV YKVDEKGTRW FYTGDIGRFH PDGCLEVIDR KKDIVKLQHG EYVSLGKVEA
601: ALGSSNYVDN IMVHADPINS YCVALVVPSR GALEKWAEEA GVKHSEFAEL CEKGEAVKEV QQSLTKAGKA AKLEKFELPA KIKLLSEPWT PESGLVTAAL
701: KIKREQIKSK FKDELSKLYA

Arabidopsis Description

LACS8Long chain acyl-CoA synthetase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJD4]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.