Factsheet for TraesCS4A01G207000.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
peroxisome 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	peroxisome, plastid, secretory
iPSORT:	plastid
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	peroxisome

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G108300.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	98.43	98.85
TraesCS4B01G110600.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	97.29	97.7
HORVU4Hr1G019780.1	Barley	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	96.71	97.13
Os11t0169800-01	Rice	plastid	46.14	88.98
OQU82968	Sorghum	endoplasmic reticulum, plasma membrane	85.0	85.37
Zm00001d053009_P009	Maize	plastid	84.71	84.96
TraesCS5A01G117700.1	Wheat	endoplasmic reticulum, vacuole	81.14	81.38
GSMUA_Achr8P30270_001	Banana	peroxisome, plastid	77.86	78.19
GSMUA_Achr11P...	Banana	endoplasmic reticulum	76.43	76.76
GSMUA_Achr1P13190_001	Banana	vacuole	69.86	76.17
Solyc11g018580.1.1	Tomato	plastid	66.14	75.9
VIT_18s0001g02810.t01	Wine grape	vacuole	74.29	74.61
PGSC0003DMT400002337	Potato	mitochondrion	73.86	74.28
GSMUA_Achr2P08130_001	Banana	peroxisome, plastid	58.86	72.66
AT1G77590.1	Thale cress	peroxisome, plastid	70.86	71.78
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	70.57	71.28
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	70.57	71.28
Bra003678.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	70.43	71.14
KRH18736	Soybean	peroxisome, plastid	69.86	70.26
KRH53234	Soybean	mitochondrion	69.0	69.6
KRH16338	Soybean	plastid, vacuole	61.29	66.31
TraesCS5A01G169600.1	Wheat	golgi	63.43	60.99
TraesCS1A01G075000.1	Wheat	golgi	32.29	33.73
TraesCS7A01G115900.1	Wheat	peroxisome	30.29	33.6
TraesCS5A01G148700.1	Wheat	peroxisome	31.43	32.98
TraesCS3A01G237700.3	Wheat	peroxisome	31.0	32.34
TraesCS5A01G411500.2	Wheat	golgi	29.0	30.57
TraesCS4A01G184900.2	Wheat	peroxisome	30.29	30.46
TraesCS5A01G133200.2	Wheat	peroxisome	30.0	29.91
TraesCS4A01G336400.4	Wheat	plastid	22.71	21.66
TraesCS4A01G336500.2	Wheat	mitochondrion, plastid	22.71	21.4

Protein Annotations

EnsemblPlants:TraesCS4A01G207000.1	EnsemblPlantsGene:TraesCS4A01G207000	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF15	PFAM:PF00501
ScanProsite:PS00455	SEG:seg	SUPFAM:SSF56801	TIGR:cd05927	MapMan:50.6.2	:

Description

No Description!

Coordinates

chr4A:-:500352424..500357005

Molecular Weight (calculated)

77088.0 Da

IEP (calculated)

7.680

GRAVY (calculated)

-0.137

Length

700 amino acids

Sequence
(BLAST)

001: MNPYFIGFVI PFVASLMLTK RKAEKAEKKR GLPVDVGGEP GYAIRNYRSE QPVETHWEGI FTLAELFEQS CKQYAYMPLH GTRKLISRET EVAADGRSFE
101: KLHLGEYEWK TYIEAFKAVC NFSSGLIQIG HQKDERVAIF ADTRAEWQIA LQACFRQNIT VVTIYASLGE GALCHSLNET EATTVICGRK ELKKLIDING
201: QLDTLKHVVY ISEDGVSSEV SLAKQCTNWR VESFEEVERL GLETPIEANL PLPSDTAVIM YTSGSTGMPK GVMMSHRNVL ATASAVMTIV PALGKKDVYL
301: AYLPLAHILE LAAETIISAV GASIGYGSPL TLTDTSNKIK KGTKGDASAL RPTLMTAVPA ILDRVRDGVR KNVDAKGGVA KKLFDIAYSR RLAAVNGSWF
401: GAWGLEKLVW DMLVFQKVHA ILGGRIRFIL SGGAPLSGET QRFINICLGA PIGQGYGLTE TCAGGTFSEY NDTSVGRVGA PLSCSFIKLI DWVEGGYLTS
501: DSPMPRGEII IGGPNVTKGY FKNEAKTNEV YKDDERGMRW FYSGDIGRLH PDGCLEIIDR KKDIVKLQHG EYVSLGKVEA TLSVSPYVDN IMVHADPSQN
601: YCVALVVAAH GELENWASKQ GIAYSDFPDL CQKQETVKEV LQSLAKAGKQ SRLEKFEIPA RIKLIPEPWT PESGLVTAAL KLKREVIKKG YQDDLAKLYR

Best Arabidopsis Sequence Match ( AT1G77590.2 )
(BLAST)

001: MFQGCFRRNV TVVTIYSSLG EEALCHSLNE TEVTTVICGS KELKKLMDIS QQLETVKRVI CMDDEFPSDV NSNWMATSFT DVQKLGRENP VDPNFPLSAD
101: VAVIMYTSGS TGLPKGVMMT HGNVLATVSA VMTIVPDLGK RDIYMAYLPL AHILELAAES VMATIGSAIG YGSPLTLTDT SNKIKKGTKG DVTALKPTIM
201: TAVPAILDRV RDGVRKKVDA KGGLSKKLFD FAYARRLSAI NGSWFGAWGL EKLLWDVLVF RKIRAVLGGQ IRYLLSGGAP LSGDTQRFIN ICVGAPIGQG
301: YGLTETCAGG TFSEFEDTSV GRVGAPLPCS FVKLVDWAEG GYLTSDKPMP RGEIVIGGSN ITLGYFKNEE KTKEVYKVDE KGMRWFYTGD IGRFHPDGCL
401: EIIDRKKDIV KLQHGEYVSL GKVEAALSIS PYVENIMVHA DSFYSYCVAL VVASQHTVEG WASKQGIDFA NFEELCTKEQ AVKEVYASLV KAAKQSRLEK
501: FEIPAKIKLL ASPWTPESGL VTAALKLKRD VIRREFSEDL TKLYA

Arabidopsis Description

LACS9Long chain acyl-CoA synthetase 9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAP8]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.