Factsheet for GSMUA_Achr1P13190_001

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 7
plasma membrane 5
golgi 5
cytosol 1
peroxisome 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	cytosol, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	vacuole
Plant-mPloc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0169800-01	Rice	plastid	44.55	78.79
GSMUA_Achr8P30270_001	Banana	peroxisome, plastid	85.2	78.48
GSMUA_Achr11P...	Banana	endoplasmic reticulum	84.42	77.76
GSMUA_Achr2P08130_001	Banana	peroxisome, plastid	63.71	72.13
KXG23059	Sorghum	endoplasmic reticulum	77.73	71.49
Zm00001d023538_P002	Maize	plastid	76.64	70.49
TraesCS4D01G108300.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	76.17	70.16
VIT_18s0001g02810.t01	Wine grape	vacuole	76.01	70.01
TraesCS4A01G207000.1	Wheat	golgi	76.17	69.86
Os12t0168700-01	Rice	vacuole	75.86	69.77
Zm00001d053009_P009	Maize	plastid	75.86	69.77
OQU82968	Sorghum	endoplasmic reticulum, plasma membrane	75.7	69.73
TraesCS4B01G110600.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	75.55	69.58
HORVU4Hr1G019780.1	Barley	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	75.55	69.58
TraesCS5D01G129800.1	Wheat	golgi	75.39	69.34
TraesCS5B01G118000.1	Wheat	endoplasmic reticulum	75.39	69.34
TraesCS5A01G117700.1	Wheat	endoplasmic reticulum, vacuole	75.39	69.34
HORVU5Hr1G036460.1	Barley	endoplasmic reticulum	75.08	69.05
AT1G77590.1	Thale cress	peroxisome, plastid	74.3	69.03
Bra003678.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	74.45	68.98
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	74.45	68.98
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	74.45	68.98
Solyc11g018580.1.1	Tomato	plastid	64.64	68.03
PGSC0003DMT400002337	Potato	mitochondrion	73.36	67.67
KRH18736	Soybean	peroxisome, plastid	72.74	67.1
KRH53234	Soybean	mitochondrion	72.27	66.86
KRH16338	Soybean	plastid, vacuole	62.31	61.82
GSMUA_AchrUn_...	Banana	peroxisome	4.83	43.66
GSMUA_Achr6P14370_001	Banana	peroxisome	33.18	32.52
GSMUA_Achr3P32060_001	Banana	peroxisome	32.24	31.6
GSMUA_Achr8P24080_001	Banana	mitochondrion	32.71	30.88
GSMUA_Achr8P10780_001	Banana	peroxisome	30.69	29.67
GSMUA_Achr7P27390_001	Banana	peroxisome	30.06	29.42
GSMUA_AchrUn_...	Banana	peroxisome	4.98	25.4
GSMUA_Achr8P08820_001	Banana	peroxisome	14.17	24.2
GSMUA_Achr8P08810_001	Banana	mitochondrion	4.83	15.66

Protein Annotations

EnsemblPlants:GSMUA_Achr1P13190_001	EnsemblPlants:GSMUA_Achr1T13190_001	EnsemblPlantsGene:GSMUA_Achr1G13190_001	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF29
PFAM:PF00501	ScanProsite:PS00455	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF56801	UniParc:UPI000296D789
UniProt:M0RZH7	MapMan:50.6.2	:	:	:	:

Description

Putative Long-chain-fatty-acid--CoA ligase 3 [Source:GMGC_GENE;Acc:GSMUA_Achr1G13190_001]

Coordinates

chr1:-:10071609..10084217

Molecular Weight (calculated)

70478.6 Da

IEP (calculated)

8.539

GRAVY (calculated)

0.063

Length

642 amino acids

Sequence
(BLAST)

001: MNPYIVGLLV ALLASIILLK PNNVKKRGLP VTVGGEPGYA VRNYRFTSPV ESLWEGISTL AELFEQSCKR FEYRPLFGTR KLIARETEVR QDGRSFEKLH
101: LGNYEWVNYG DAFKAVCSFA SGLVQVGHKN NERVAIFSDT RAEWFIALQG CFRQNVTVVT IYTSLGEEAL CHSLNETEVS SVICGHKELK KLILVTDIAV
201: IMYTSGSTGL PKGVMMTHGN VLATVSAVMT IVPSIGTKDI YLAYLPLAHI FEFAAENVLV AAGTTIGYGS PLTLTDTSNK IKKGTKGDSS VLRPTLMTAV
301: PAILDRVRDG VWKKIDAKGG LSKKLFNAAY GRRLAAINGS WFGAWGLEKV LWEFLVFRNI RAVLGGHVRF LLSGGAPLSG DTQRFISICL GAPIAQVYGL
401: TETCAGGSFS EHDDISVGRV GAPLPCSYVK LIDWPEGGYL VTDLPMPRGE IVIGGPNITL GYYKMEGKTK EVYKVDERGM HWFYTGDIGR FHPDGCLEII
501: DRKKDIVKLQ HGEYVSLGKI ESVLVASPYV DSIMLHADPY HSFCVALVVA AQRALEDWAS KQGIIYSDFS DLCQKAETVK EVHGSLFKAA KQALLDKFEI
601: PAKIKLIPEP WTPESGLVTA ALKIKREAIK KAYADDLAKL YA

Best Arabidopsis Sequence Match ( AT1G77590.1 )
(BLAST)

001: MIPYAAGVIV PLALTFLVQK SKKEKKRGVV VDVGGEPGYA IRNHRFTEPV SSHWEHISTL PELFEISCNA HSDRVFLGTR KLISREIETS EDGKTFEKLH
101: LGDYEWLTFG KTLEAVCDFA SGLVQIGHKT EERVAIFADT REEWFISLQG CFRRNVTVVT IYSSLGEEAL CHSLNETEVT TVICGSKELK KLMDISQQLE
201: TVKRVICMDD EFPSDVNSNW MATSFTDVQK LGRENPVDPN FPLSADVAVI MYTSGSTGLP KGVMMTHGNV LATVSAVMTI VPDLGKRDIY MAYLPLAHIL
301: ELAAESVMAT IGSAIGYGSP LTLTDTSNKI KKGTKGDVTA LKPTIMTAVP AILDRVRDGV RKKVDAKGGL SKKLFDFAYA RRLSAINGSW FGAWGLEKLL
401: WDVLVFRKIR AVLGGQIRYL LSGGAPLSGD TQRFINICVG APIGQGYGLT ETCAGGTFSE FEDTSVGRVG APLPCSFVKL VDWAEGGYLT SDKPMPRGEI
501: VIGGSNITLG YFKNEEKTKE VYKVDEKGMR WFYTGDIGRF HPDGCLEIID RKKDIVKLQH GEYVSLGKVE AALSISPYVE NIMVHADSFY SYCVALVVAS
601: QHTVEGWASK QGIDFANFEE LCTKEQAVKE VYASLVKAAK QSRLEKFEIP AKIKLLASPW TPESGLVTAA LKLKRDVIRR EFSEDLTKLY A

Arabidopsis Description

LACS9Long chain acyl-CoA synthetase 9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAP8]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.