Factsheet for GSMUA_Achr7P27390_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
peroxisome 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_03s0063g01880.t01	Wine grape	peroxisome	72.71	72.38
KRH48841	Soybean	peroxisome	23.78	71.23
Solyc01g109180.2.1	Tomato	nucleus	70.58	70.26
Os11t0558300-01	Rice	peroxisome	70.73	70.2
PGSC0003DMT400064817	Potato	peroxisome	70.43	70.11
KXG28707	Sorghum	peroxisome	70.88	69.92
KRH24533	Soybean	peroxisome	69.05	69.05
Zm00001d053127_P005	Maize	mitochondrion	69.82	68.98
TraesCS5D01G420300.1	Wheat	golgi	69.51	68.88
TraesCS5B01G415100.1	Wheat	peroxisome	69.51	68.88
TraesCS5A01G411500.2	Wheat	golgi	69.66	68.83
HORVU5Hr1G099350.15	Barley	peroxisome	69.82	68.56
KRH29538	Soybean	peroxisome	68.45	68.45
KRH49531	Soybean	peroxisome	68.75	68.33
KRG89197	Soybean	peroxisome	68.75	68.33
AT1G49430.1	Thale cress	peroxisome	65.4	64.51
CDY29350	Canola	peroxisome	65.09	64.11
Bra032284.1-P	Field mustard	peroxisome	65.09	64.11
CDY59237	Canola	peroxisome	64.79	63.81
GSMUA_AchrUn_...	Banana	peroxisome	6.25	57.75
GSMUA_Achr3P32060_001	Banana	peroxisome	57.32	57.4
GSMUA_Achr6P14370_001	Banana	peroxisome	55.34	55.42
GSMUA_Achr8P10780_001	Banana	peroxisome	48.17	47.59
GSMUA_Achr8P24080_001	Banana	mitochondrion	37.65	36.32
AT2G47245.1	Thale cress	endoplasmic reticulum	7.01	35.38
GSMUA_Achr1P13190_001	Banana	vacuole	29.42	30.06
GSMUA_Achr2P08130_001	Banana	peroxisome, plastid	25.3	29.28
GSMUA_Achr11P...	Banana	endoplasmic reticulum	30.95	29.12
GSMUA_Achr8P30270_001	Banana	peroxisome, plastid	30.79	28.98
GSMUA_Achr8P08820_001	Banana	peroxisome	13.41	23.4
GSMUA_AchrUn_...	Banana	peroxisome	4.12	21.43
GSMUA_Achr8P08810_001	Banana	mitochondrion	4.73	15.66

Protein Annotations

EnsemblPlants:GSMUA_Achr7P27390_001	EnsemblPlants:GSMUA_Achr7T27390_001	EnsemblPlantsGene:GSMUA_Achr7G27390_001	Gene3D:3.40.50.12780	GO:GO:0001676	GO:GO:0003674
GO:GO:0003824	GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	InterPro:AMP-binding_CS
InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF4	PFAM:PF00501	ScanProsite:PS00455	SUPFAM:SSF56801
UniParc:UPI00029561A4	UniProt:M0TL75	MapMan:50.6.2	:	:	:

Description

Putative Fatty acyl-CoA synthetase B [Source:GMGC_GENE;Acc:GSMUA_Achr7G27390_001]

Coordinates

chr7:-:28424645..28430578

Molecular Weight (calculated)

73766.2 Da

IEP (calculated)

6.449

GRAVY (calculated)

-0.099

Length

656 amino acids

Sequence
(BLAST)

001: MEVYTIQVEE GKPTVGNKPS CGPVYRCIYA KDGLLESPVG IDSPWDFFSE SVKRYPKNQM LGRRQVIDGK AGNYVWQTYE EAYEVALKIG SAIRQTGVNL
101: GDCSGIYGSN CPEWLIAMEA CNSQGICYVP LYDSLGPNAV EFIINHAEVS IAFVQENKMH SILMCLPRCA HLKTIVSFGM VTGEQKKEAE NVGVSCFSWK
201: EFVFMATANC KLPPKRKDDI CTIMYTSGTT GEPKGVILTN KAIIAEVINN EHLLLETDKV FTEEDSYLSF LPLAHVFDQI MEIYCIYKGA SIGFWQGDVR
301: YLMEDIQELK PTIFCGVPRV YDRIYTGINQ KISSGGLSAR MSFSLAYVYK LQNLRRGFKQ DEASPFFDRL IFNKIRQVTG GRVRIMISGA APLPRHVEEF
401: LRVTTCSVVI QGYGLTESCS GCFTSIANVF SMMGTVGVPA ATIEARLESV LELGYDALSD VPRGEICLRG NTLFSGYHKR ADLLDEVLVD GWFHTGDIGE
501: WQPNGAMKII DRKKNIFKLS QGEYVAVEVL ENTYMQCPLV TSVWVYGNSF ESFLVSVVVP EKNSLEEWAA ANKVKGSFEL LCKHPEARKH VLEELNYTAR
601: KHQLKGFEML KAVHLEPSPF DMERDLITPT FKLKRPQLLK HFKECIDGLY REAKVL

Best Arabidopsis Sequence Match ( AT1G49430.1 )
(BLAST)

001: MSLAADNVLL VEEGRPATAE HPSAGPVYRC KYAKDGLLDL PTDIDSPWQF FSEAVKKYPN EQMLGQRVTT DSKVGPYTWI TYKEAHDAAI RIGSAIRSRG
101: VDPGHCCGIY GANCPEWIIA MEACMSQGIT YVPLYDSLGV NAVEFIINHA EVSLVFVQEK TVSSILSCQK GCSSNLKTIV SFGEVSSTQK EEAKNQCVSL
201: FSWNEFSLMG NLDEANLPRK RKTDICTIMY TSGTTGEPKG VILNNAAISV QVLSIDKMLE VTDRSCDTSD VFFSYLPLAH CYDQVMEIYF LSRGSSVGYW
301: RGDIRYLMDD VQALKPTVFC GVPRVYDKLY AGIMQKISAS GLIRKKLFDF AYNYKLGNMR KGFSQEEASP RLDRLMFDKI KEALGGRAHM LLSGAAPLPR
401: HVEEFLRIIP ASNLSQGYGL TESCGGSFTT LAGVFSMVGT VGVPMPTVEA RLVSVPEMGY DAFSADVPRG EICLRGNSMF SGYHKRQDLT DQVLIDGWFH
501: TGDIGEWQED GSMKIIDRKK NIFKLSQGEY VAVENLENTY SRCPLIAQIW VYGNSFESFL VGVVVPDRKA IEDWAKLNYQ SPNDFESLCQ NLKAQKYFLD
601: ELNSTAKQYQ LKGFEMLKAI HLEPNPFDIE RDLITPTFKL KRPQLLQHYK GIVDQLYSEA KRSMA

Arabidopsis Description

LACS2Long chain acyl-CoA synthetase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIA9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.