CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
peroxisome 3
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57847	Soybean	cytosol	12.88	96.59
KRH48841	Soybean	peroxisome	31.97	96.35
KRH49531	Soybean	peroxisome	95.76	95.76
KRH26020	Soybean	cytosol	12.73	94.38
KRH24533	Soybean	peroxisome	82.27	82.77
KRH29538	Soybean	peroxisome	81.21	81.71
VIT_03s0063g01880.t01	Wine grape	peroxisome	75.15	75.27
PGSC0003DMT400064817	Potato	peroxisome	73.94	74.05
Solyc01g109180.2.1	Tomato	nucleus	73.64	73.75
GSMUA_Achr7P27390_001	Banana	peroxisome	68.33	68.75
AT1G49430.1	Thale cress	peroxisome	67.88	67.37
Os11t0558300-01	Rice	peroxisome	67.42	67.32
CDY59237	Canola	peroxisome	67.88	67.27
CDY29350	Canola	peroxisome	67.73	67.12
Bra032284.1-P	Field mustard	peroxisome	67.73	67.12
KXG28707	Sorghum	peroxisome	66.52	66.02
TraesCS5D01G420300.1	Wheat	golgi	65.15	64.95
TraesCS5B01G415100.1	Wheat	peroxisome	65.0	64.8
TraesCS5A01G411500.2	Wheat	golgi	65.15	64.76
Zm00001d053127_P005	Maize	mitochondrion	65.15	64.76
HORVU5Hr1G099350.15	Barley	peroxisome	65.0	64.22
KRH27846	Soybean	peroxisome	55.91	55.66
KRH60037	Soybean	peroxisome	56.06	55.64
KRH77642	Soybean	endoplasmic reticulum	56.52	55.59
KRH41306	Soybean	peroxisome	19.39	50.0
KRH69184	Soybean	peroxisome	49.85	49.85
KRH31765	Soybean	peroxisome	49.24	49.24
KRG96554	Soybean	peroxisome	48.03	47.89
KRG94065	Soybean	vacuole	13.18	47.54
KRH68292	Soybean	endoplasmic reticulum	47.12	46.98
KRH66241	Soybean	peroxisome	23.18	43.47
KRH35544	Soybean	endoplasmic reticulum, mitochondrion	39.85	37.79
KRG91264	Soybean	peroxisome	39.7	37.54
KRG89997	Soybean	endoplasmic reticulum	31.21	30.56
KRH18736	Soybean	peroxisome, plastid	31.06	29.45
KRH53234	Soybean	mitochondrion	30.91	29.39
KRH17725	Soybean	peroxisome	32.12	29.24
KRG89995	Soybean	endoplasmic reticulum, mitochondrion	32.12	29.24
KRH16338	Soybean	plastid, vacuole	27.73	28.28
KRH13185	Soybean	cytosol	21.82	23.04
KRH31560	Soybean	plastid	24.39	22.36
KRH58837	Soybean	plastid	23.64	21.28

Protein Annotations

EMBL:ACUP02012191	EnsemblPlants:KRG89197	EnsemblPlantsGene:GLYMA_20G007900	EntrezGene:100779735	Gene3D:3.40.50.12780	GO:GO:0003674
GO:GO:0003824	GO:GO:0008150	GO:GO:0008152	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig
PANTHER:PTHR43272	PANTHER:PTHR43272:SF4	PFAM:PF00501	PFAM:PF13193	ProteinID:KRG89197	ProteinID:KRG89197.1
ScanProsite:PS00455	SUPFAM:SSF56801	UniParc:UPI000233D92E	UniProt:I1ND18	MapMan:50.6.2	:

Description

hypothetical protein

Coordinates

chr20:+:734922..741835

Molecular Weight (calculated)

73835.7 Da

IEP (calculated)

6.814

GRAVY (calculated)

-0.208

Length

660 amino acids

Sequence
(BLAST)

001: MPEVYTVKVE EGRLATDGKP SVGPVYRSIY AKDGLLEVPS DFKSPWDFFR DSVKRNPNNN MLGRRQKTES KLGSYTWLTY QDVYDAAMKM GSAIRSRGVN
101: PGDRCGIYGS NCPEWIIAME ACNSCAVSYV PLYDTLGPNA VEFIINHAEV SIAFVQEKKI PSVLSCLAQC SSNLKTIVSF GSVSTTQKKE AEGHGASCFS
201: WGEFLQLGCL DWDLPSKKKT DICTIMYTSG TTGDPKGVVI KNEAFMAEVL SVDHIIMLTD RVAGEDDVYF SFLPLAHVYD QIMETYCISK GSSIGFWQGD
301: VRFLLEDIQE LKPTIFCGVP RVFDRIYAGI KSKVSSAGPL QSTLFQCAYN YKLKYLEKGL PQHKAAPLFD RLVFDKTKLA LGGRVRILLS GAAPLPRHVE
401: EFMRVTSGST LSQGYGLTES CAGCFTAIGD VYSMTGTVGV PMTTIEARLE SVPEMGYDAL SNVPRGEICL RGNTLFSGYH KREDLTKEVM VDGWFHTGDI
501: GEWQSNGAMK IIDRKKNIFK LSQGEYIAVE NIENKYLQCP LIASIWVYGN SFESFLVAVV VPERKAIEDW AKEHNLTDDF KSLCDNLKAR KHILDELNST
601: GQKHQLRGFE LLKAIHLEPN PFDIERDLIT PTFKLKRPQL LKYYKDHIDQ LYKEAKGAMV

Best Arabidopsis Sequence Match ( AT1G49430.1 )
(BLAST)

001: MSLAADNVLL VEEGRPATAE HPSAGPVYRC KYAKDGLLDL PTDIDSPWQF FSEAVKKYPN EQMLGQRVTT DSKVGPYTWI TYKEAHDAAI RIGSAIRSRG
101: VDPGHCCGIY GANCPEWIIA MEACMSQGIT YVPLYDSLGV NAVEFIINHA EVSLVFVQEK TVSSILSCQK GCSSNLKTIV SFGEVSSTQK EEAKNQCVSL
201: FSWNEFSLMG NLDEANLPRK RKTDICTIMY TSGTTGEPKG VILNNAAISV QVLSIDKMLE VTDRSCDTSD VFFSYLPLAH CYDQVMEIYF LSRGSSVGYW
301: RGDIRYLMDD VQALKPTVFC GVPRVYDKLY AGIMQKISAS GLIRKKLFDF AYNYKLGNMR KGFSQEEASP RLDRLMFDKI KEALGGRAHM LLSGAAPLPR
401: HVEEFLRIIP ASNLSQGYGL TESCGGSFTT LAGVFSMVGT VGVPMPTVEA RLVSVPEMGY DAFSADVPRG EICLRGNSMF SGYHKRQDLT DQVLIDGWFH
501: TGDIGEWQED GSMKIIDRKK NIFKLSQGEY VAVENLENTY SRCPLIAQIW VYGNSFESFL VGVVVPDRKA IEDWAKLNYQ SPNDFESLCQ NLKAQKYFLD
601: ELNSTAKQYQ LKGFEMLKAI HLEPNPFDIE RDLITPTFKL KRPQLLQHYK GIVDQLYSEA KRSMA

Arabidopsis Description

LACS2Long chain acyl-CoA synthetase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIA9]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.