Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- cytosol 1
- peroxisome 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY29350 | Canola | peroxisome | 91.28 | 91.14 |
| Bra032284.1-P | Field mustard | peroxisome | 91.28 | 91.14 |
| CDY59237 | Canola | peroxisome | 90.83 | 90.69 |
| KRH48841 | Soybean | peroxisome | 24.66 | 74.89 |
| PGSC0003DMT400064817 | Potato | peroxisome | 67.97 | 68.59 |
| Solyc01g109180.2.1 | Tomato | nucleus | 67.82 | 68.44 |
| KRG89197 | Soybean | peroxisome | 67.37 | 67.88 |
| KRH49531 | Soybean | peroxisome | 67.22 | 67.73 |
| VIT_03s0063g01880.t01 | Wine grape | peroxisome | 67.07 | 67.68 |
| KRH24533 | Soybean | peroxisome | 66.62 | 67.53 |
| KRH29538 | Soybean | peroxisome | 66.32 | 67.23 |
| GSMUA_Achr7P27390_001 | Banana | peroxisome | 64.51 | 65.4 |
| Os11t0558300-01 | Rice | peroxisome | 62.71 | 63.09 |
| TraesCS5D01G420300.1 | Wheat | golgi | 61.8 | 62.08 |
| Zm00001d053127_P005 | Maize | mitochondrion | 61.95 | 62.05 |
| TraesCS5A01G411500.2 | Wheat | golgi | 61.65 | 61.75 |
| HORVU5Hr1G099350.15 | Barley | peroxisome | 61.95 | 61.68 |
| KXG28707 | Sorghum | peroxisome | 61.5 | 61.5 |
| TraesCS5B01G415100.1 | Wheat | peroxisome | 61.2 | 61.48 |
| AT1G64400.1 | Thale cress | cytosol, peroxisome, plastid | 53.08 | 53.08 |
| AT4G23850.1 | Thale cress | peroxisome | 52.33 | 52.25 |
| AT4G11030.1 | Thale cress | peroxisome | 52.18 | 52.1 |
| AT2G47240.2 | Thale cress | peroxisome | 44.36 | 44.7 |
| AT3G05970.1 | Thale cress | plastid | 38.95 | 36.95 |
| AT5G27600.1 | Thale cress | peroxisome, plastid | 38.8 | 36.86 |
| AT2G47245.1 | Thale cress | endoplasmic reticulum | 6.32 | 32.31 |
| AT1G77590.1 | Thale cress | peroxisome, plastid | 30.53 | 29.38 |
| AT2G04350.1 | Thale cress | peroxisome | 31.28 | 28.89 |
| AT3G23790.1 | Thale cress | plastid | 26.02 | 23.96 |
| AT4G14070.1 | Thale cress | plastid | 25.26 | 23.11 |
Protein Annotations
| Gene3D:3.40.50.12780 | MapMan:50.6.2 | EntrezGene:841367 | UniProt:A0A178W3L9 | ProteinID:AAD43157.1 | ProteinID:AEE32429.1 |
| EMBL:AF503752 | InterPro:AMP-bd_C | InterPro:AMP-binding_CS | InterPro:AMP-dep_Synth/Lig | ArrayExpress:AT1G49430 | EnsemblPlantsGene:AT1G49430 |
| RefSeq:AT1G49430 | TAIR:AT1G49430 | RefSeq:AT1G49430-TAIR-G | EnsemblPlants:AT1G49430.1 | TAIR:AT1G49430.1 | EMBL:AY065424 |
| EMBL:AY094420 | Unigene:At.27757 | EMBL:BT001970 | GO:GO:0000166 | GO:GO:0001676 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004467 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0006629 | GO:GO:0006631 | GO:GO:0006950 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009506 | GO:GO:0009605 |
| GO:GO:0009607 | GO:GO:0009653 | GO:GO:0009791 | GO:GO:0009987 | GO:GO:0010143 | GO:GO:0010311 |
| GO:GO:0016874 | GO:GO:0031957 | GO:GO:0050832 | GO:GO:0102391 | Symbol:LACS2 | RefSeq:NP_175368.2 |
| ProteinID:OAP12135.1 | PFAM:PF00501 | PFAM:PF13193 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0009067 | PO:PO:0009073 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | ScanProsite:PS00455 | PANTHER:PTHR43272 |
| PANTHER:PTHR43272:SF4 | UniProt:Q9XIA9 | SUPFAM:SSF56801 | UniParc:UPI000000BD72 | : | : |
Description
LACS2Long chain acyl-CoA synthetase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIA9]
Coordinates
chr1:+:18290942..18295905
Molecular Weight (calculated)
74393.2 Da
IEP (calculated)
6.017
GRAVY (calculated)
-0.196
Length
665 amino acids
Sequence
(BLAST)
(BLAST)
001: MSLAADNVLL VEEGRPATAE HPSAGPVYRC KYAKDGLLDL PTDIDSPWQF FSEAVKKYPN EQMLGQRVTT DSKVGPYTWI TYKEAHDAAI RIGSAIRSRG
101: VDPGHCCGIY GANCPEWIIA MEACMSQGIT YVPLYDSLGV NAVEFIINHA EVSLVFVQEK TVSSILSCQK GCSSNLKTIV SFGEVSSTQK EEAKNQCVSL
201: FSWNEFSLMG NLDEANLPRK RKTDICTIMY TSGTTGEPKG VILNNAAISV QVLSIDKMLE VTDRSCDTSD VFFSYLPLAH CYDQVMEIYF LSRGSSVGYW
301: RGDIRYLMDD VQALKPTVFC GVPRVYDKLY AGIMQKISAS GLIRKKLFDF AYNYKLGNMR KGFSQEEASP RLDRLMFDKI KEALGGRAHM LLSGAAPLPR
401: HVEEFLRIIP ASNLSQGYGL TESCGGSFTT LAGVFSMVGT VGVPMPTVEA RLVSVPEMGY DAFSADVPRG EICLRGNSMF SGYHKRQDLT DQVLIDGWFH
501: TGDIGEWQED GSMKIIDRKK NIFKLSQGEY VAVENLENTY SRCPLIAQIW VYGNSFESFL VGVVVPDRKA IEDWAKLNYQ SPNDFESLCQ NLKAQKYFLD
601: ELNSTAKQYQ LKGFEMLKAI HLEPNPFDIE RDLITPTFKL KRPQLLQHYK GIVDQLYSEA KRSMA
101: VDPGHCCGIY GANCPEWIIA MEACMSQGIT YVPLYDSLGV NAVEFIINHA EVSLVFVQEK TVSSILSCQK GCSSNLKTIV SFGEVSSTQK EEAKNQCVSL
201: FSWNEFSLMG NLDEANLPRK RKTDICTIMY TSGTTGEPKG VILNNAAISV QVLSIDKMLE VTDRSCDTSD VFFSYLPLAH CYDQVMEIYF LSRGSSVGYW
301: RGDIRYLMDD VQALKPTVFC GVPRVYDKLY AGIMQKISAS GLIRKKLFDF AYNYKLGNMR KGFSQEEASP RLDRLMFDKI KEALGGRAHM LLSGAAPLPR
401: HVEEFLRIIP ASNLSQGYGL TESCGGSFTT LAGVFSMVGT VGVPMPTVEA RLVSVPEMGY DAFSADVPRG EICLRGNSMF SGYHKRQDLT DQVLIDGWFH
501: TGDIGEWQED GSMKIIDRKK NIFKLSQGEY VAVENLENTY SRCPLIAQIW VYGNSFESFL VGVVVPDRKA IEDWAKLNYQ SPNDFESLCQ NLKAQKYFLD
601: ELNSTAKQYQ LKGFEMLKAI HLEPNPFDIE RDLITPTFKL KRPQLLQHYK GIVDQLYSEA KRSMA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.