Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- cytosol 2
- peroxisome 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47618 | Canola | peroxisome | 93.09 | 92.95 |
| Bra013735.1-P | Field mustard | peroxisome | 86.79 | 92.78 |
| CDY03515 | Canola | peroxisome | 92.79 | 92.65 |
| AT4G11030.1 | Thale cress | peroxisome | 80.18 | 80.18 |
| VIT_02s0025g01410.t01 | Wine grape | peroxisome | 75.98 | 76.44 |
| Solyc08g082280.2.1 | Tomato | nucleus, plastid | 75.08 | 75.99 |
| Solyc08g008310.2.1 | Tomato | peroxisome | 66.97 | 74.71 |
| KRH27846 | Soybean | peroxisome | 73.72 | 74.06 |
| KRH77642 | Soybean | endoplasmic reticulum | 73.87 | 73.32 |
| GSMUA_Achr6P14370_001 | Banana | peroxisome | 71.62 | 72.82 |
| AT1G64400.1 | Thale cress | cytosol, peroxisome, plastid | 72.37 | 72.48 |
| GSMUA_Achr3P32060_001 | Banana | peroxisome | 71.17 | 72.37 |
| KRH60037 | Soybean | peroxisome | 70.87 | 70.98 |
| HORVU3Hr1G059140.1 | Barley | peroxisome | 70.12 | 70.97 |
| TraesCS3B01G266100.1 | Wheat | golgi | 69.97 | 70.82 |
| TraesCS3D01G237900.1 | Wheat | peroxisome | 69.97 | 70.82 |
| Zm00001d044016_P001 | Maize | mitochondrion | 69.22 | 70.38 |
| TraesCS3A01G237700.3 | Wheat | peroxisome | 69.22 | 68.7 |
| TraesCS5B01G147300.1 | Wheat | peroxisome | 68.02 | 68.43 |
| TraesCS5A01G148700.1 | Wheat | peroxisome | 68.32 | 68.22 |
| PGSC0003DMT400014954 | Potato | cytosol | 11.86 | 68.1 |
| TraesCS5D01G144200.2 | Wheat | peroxisome | 68.17 | 68.07 |
| Os01t0681200-01 | Rice | plasma membrane | 67.87 | 67.97 |
| Zm00001d043851_P001 | Maize | mitochondrion | 67.12 | 67.32 |
| HORVU5Hr1G046950.26 | Barley | peroxisome | 68.32 | 66.81 |
| KXG27302 | Sorghum | cytosol | 5.41 | 66.67 |
| TraesCS7D01G110700.1 | Wheat | peroxisome | 64.11 | 65.69 |
| TraesCS7B01G012700.1 | Wheat | peroxisome | 63.36 | 64.92 |
| TraesCS7A01G115900.1 | Wheat | peroxisome | 61.11 | 64.5 |
| Os01t0655800-01 | Rice | plasma membrane | 65.62 | 64.26 |
| Os06t0158000-01 | Rice | plasma membrane | 58.71 | 63.58 |
| Zm00001d045295_P001 | Maize | extracellular | 64.41 | 63.56 |
| KRH41306 | Soybean | peroxisome | 24.32 | 63.28 |
| KRG94065 | Soybean | vacuole | 16.22 | 59.02 |
| HORVU7Hr1G024350.1 | Barley | endoplasmic reticulum, vacuole | 63.21 | 58.96 |
| AT1G49430.1 | Thale cress | peroxisome | 52.25 | 52.33 |
| AT2G47240.2 | Thale cress | peroxisome | 47.75 | 48.18 |
| AT5G27600.1 | Thale cress | peroxisome, plastid | 38.74 | 36.86 |
| AT3G05970.1 | Thale cress | plastid | 38.44 | 36.52 |
| AT2G47245.1 | Thale cress | endoplasmic reticulum | 6.61 | 33.85 |
| AT1G77590.1 | Thale cress | peroxisome, plastid | 32.28 | 31.11 |
| AT2G04350.1 | Thale cress | peroxisome | 32.58 | 30.14 |
| AT3G23790.1 | Thale cress | plastid | 25.53 | 23.55 |
| AT4G14070.1 | Thale cress | plastid | 24.32 | 22.28 |
Protein Annotations
| Gene3D:3.40.50.12780 | MapMan:50.6.2 | EntrezGene:828484 | ProteinID:AEE84812.1 | EMBL:AF503754 | InterPro:AMP-binding_CS |
| InterPro:AMP-dep_Synth/Lig | ArrayExpress:AT4G23850 | EnsemblPlantsGene:AT4G23850 | RefSeq:AT4G23850 | TAIR:AT4G23850 | RefSeq:AT4G23850-TAIR-G |
| EnsemblPlants:AT4G23850.1 | TAIR:AT4G23850.1 | EMBL:AY049239 | Unigene:At.3384 | ProteinID:CAB43885.1 | ProteinID:CAB81303.1 |
| GO:GO:0000166 | GO:GO:0001676 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004467 | GO:GO:0005488 |
| GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005794 |
| GO:GO:0005886 | GO:GO:0006629 | GO:GO:0006631 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016874 | GO:GO:0102391 | Symbol:LACS4 | RefSeq:NP_194116.1 | PFAM:PF00501 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00455 | PANTHER:PTHR43272 | PANTHER:PTHR43272:SF9 |
| UniProt:Q9T0A0 | SUPFAM:SSF56801 | UniParc:UPI000004BF2C | : | : | : |
Description
LACS4Long chain acyl-CoA synthetase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0A0]
Coordinates
chr4:-:12403454..12408421
Molecular Weight (calculated)
74511.9 Da
IEP (calculated)
5.630
GRAVY (calculated)
-0.144
Length
666 amino acids
Sequence
(BLAST)
(BLAST)
001: MSQQKKYIFQ VEEGKEGSDG RPSVGPVYRS IFAKDGFPDP IEGMDSCWDV FRMSVEKYPN NPMLGRREIV DGKPGKYVWQ TYQEVYDIVM KLGNSLRSVG
101: VKDEAKCGIY GANSPEWIIS MEACNAHGLY CVPLYDTLGA DAVEFIISHS EVSIVFVEEK KISELFKTCP NSTEYMKTVV SFGGVSREQK EEAETFGLVI
201: YAWDEFLKLG EGKQYDLPIK KKSDICTIMY TSGTTGDPKG VMISNESIVT LIAGVIRLLK SANEALTVKD VYLSYLPLAH IFDRVIEECF IQHGAAIGFW
301: RGDVKLLIED LAELKPTIFC AVPRVLDRVY SGLQKKLSDG GFLKKFIFDS AFSYKFGYMK KGQSHVEASP LFDKLVFSKV KQGLGGNVRI ILSGAAPLAS
401: HVESFLRVVA CCHVLQGYGL TESCAGTFVS LPDELGMLGT VGPPVPNVDI RLESVPEMEY DALASTARGE ICIRGKTLFS GYYKREDLTK EVLIDGWLHT
501: GDVGEWQPDG SMKIIDRKKN IFKLSQGEYV AVENIENIYG EVQAVDSVWV YGNSFESFLI AIANPNQHIL ERWAAENGVS GDYDALCQNE KAKEFILGEL
601: VKMAKEKKMK GFEIIKAIHL DPVPFDMERD LLTPTFKKKR PQLLKYYQSV IDEMYKTINA KFASRG
101: VKDEAKCGIY GANSPEWIIS MEACNAHGLY CVPLYDTLGA DAVEFIISHS EVSIVFVEEK KISELFKTCP NSTEYMKTVV SFGGVSREQK EEAETFGLVI
201: YAWDEFLKLG EGKQYDLPIK KKSDICTIMY TSGTTGDPKG VMISNESIVT LIAGVIRLLK SANEALTVKD VYLSYLPLAH IFDRVIEECF IQHGAAIGFW
301: RGDVKLLIED LAELKPTIFC AVPRVLDRVY SGLQKKLSDG GFLKKFIFDS AFSYKFGYMK KGQSHVEASP LFDKLVFSKV KQGLGGNVRI ILSGAAPLAS
401: HVESFLRVVA CCHVLQGYGL TESCAGTFVS LPDELGMLGT VGPPVPNVDI RLESVPEMEY DALASTARGE ICIRGKTLFS GYYKREDLTK EVLIDGWLHT
501: GDVGEWQPDG SMKIIDRKKN IFKLSQGEYV AVENIENIYG EVQAVDSVWV YGNSFESFLI AIANPNQHIL ERWAAENGVS GDYDALCQNE KAKEFILGEL
601: VKMAKEKKMK GFEIIKAIHL DPVPFDMERD LLTPTFKKKR PQLLKYYQSV IDEMYKTINA KFASRG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.