Factsheet for PGSC0003DMT400014954

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
cytosol 4
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_02s0025g01410.t01	Wine grape	peroxisome	71.55	12.54
KRH27846	Soybean	peroxisome	71.55	12.52
CDY47618	Canola	peroxisome	71.55	12.44
CDY03515	Canola	peroxisome	71.55	12.44
KRH77642	Soybean	endoplasmic reticulum	70.69	12.22
AT4G23850.1	Thale cress	peroxisome	68.1	11.86
Bra035259.1-P	Field mustard	peroxisome	68.1	11.86
CDX86825	Canola	peroxisome	68.1	11.86
CDY25270	Canola	peroxisome	67.24	11.84
CDX94232	Canola	peroxisome	67.24	11.8
AT4G11030.1	Thale cress	peroxisome	67.24	11.71
KRH41306	Soybean	peroxisome	25.0	11.33
AT1G64400.1	Thale cress	cytosol, peroxisome, plastid	63.79	11.13
CDY40856	Canola	peroxisome	68.97	10.91
KRH60037	Soybean	peroxisome	62.07	10.83
CDY46530	Canola	peroxisome	66.38	9.8
Bra027700.1-P	Field mustard	peroxisome	66.38	9.32
PGSC0003DMT400000613	Potato	peroxisome	52.59	9.3
Bra013735.1-P	Field mustard	peroxisome	46.55	8.67
PGSC0003DMT400064817	Potato	peroxisome	47.41	8.35
CDY64879	Canola	peroxisome	66.38	8.02
PGSC0003DMT400023374	Potato	peroxisome	45.69	8.02
Solyc08g008310.2.1	Tomato	peroxisome	40.52	7.87
Bra033159.1-P	Field mustard	peroxisome	30.17	5.79
PGSC0003DMT400044860	Potato	peroxisome	27.59	4.41
PGSC0003DMT400000868	Potato	peroxisome	25.86	4.1
PGSC0003DMT400002337	Potato	mitochondrion	24.14	4.02
PGSC0003DMT400053079	Potato	cytosol	6.03	1.13
KRG94065	Soybean	vacuole	0.0	0.0
KXG27302	Sorghum	cytosol	0.0	0.0
PGSC0003DMT400063438	Potato	peroxisome	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400014954	EnsemblPlantsGene:PGSC0003DMG400005838	PANTHER:PTHR43272	PANTHER:PTHR43272:SF6	PGSC:PGSC0003DMG400005838	SUPFAM:SSF56801
UniParc:UPI0002948FB6	UniProt:M1A563	MapMan:35.1	:	:	:

Description

Long-chain acyl-CoA synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG400005838]

Coordinates

chr8:-:5122303..5124048

Molecular Weight (calculated)

13016.8 Da

IEP (calculated)

9.644

GRAVY (calculated)

-0.453

Length

116 amino acids

Sequence
(BLAST)

001: MAEKFIIEME PAKPAKDGKP SVGPVYRSLF AKDGFPPPIE GLDSCWDIFR LSVEKYPNNR MLGHRKIVDG KPGKYVWKTY KEVYDIVIKV GNSIRNCGVE
101: KNNANDKVSS LNTVAV

Best Arabidopsis Sequence Match ( AT4G11030.1 )
(BLAST)

001: MTSQKRFIFE VEAAKEATDG NPSVGPVYRS TFAQNGFPNP IDGIQSCWDI FRTAVEKYPN NRMLGRREIS NGKAGKYVWK TYKEVYDIVI KLGNSLRSCG
101: IKEGEKCGIY GINCCEWIIS MEACNAHGLY CVPLYDTLGA GAVEFIISHA EVSIAFVEEK KIPELFKTCP NSTKYMKTVV SFGGVKPEQK EEAEKLGLVI
201: HSWDEFLKLG EGKQYELPIK KPSDICTIMY TSGTTGDPKG VMISNESIVT ITTGVMHFLG NVNASLSEKD VYISYLPLAH VFDRAIEECI IQVGGSIGFW
301: RGDVKLLIED LGELKPSIFC AVPRVLDRVY TGLQQKLSGG GFFKKKVFDV AFSYKFGNMK KGQSHVAASP FCDKLVFNKV KQGLGGNVRI ILSGAAPLAS
401: HIESFLRVVA CCNVLQGYGL TESCAGTFAT FPDELDMLGT VGPPVPNVDI RLESVPEMNY DALGSTPRGE ICIRGKTLFS GYYKREDLTK EVFIDGWLHT
501: GDVGEWQPNG SMKIIDRKKN IFKLAQGEYV AVENLENVYS QVEVIESIWV YGNSFESFLV AIANPAQQTL ERWAVENGVN GDFNSICQNA KAKAFILGEL
601: VKTAKENKLK GFEIIKDVHL EPVAFDMERD LLTPTYKKKR PQLLKYYQNV IHEMYKTTKE SLASGQ

Arabidopsis Description

LACS5Long chain acyl-CoA synthetase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9T009]
SUBAcon: [peroxisome]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.