Subcellular Localization
min:
: max
Winner_takes_all: peroxisome
Predictor Summary:
Predictor Summary:
- cytosol 2
- peroxisome 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g095750.2.1 | Tomato | peroxisome | 97.56 | 96.82 |
| OQU75859 | Sorghum | peroxisome | 64.33 | 65.02 |
| KXG19348 | Sorghum | peroxisome | 63.87 | 64.56 |
| TraesCS7B01G012700.1 | Wheat | peroxisome | 63.57 | 64.15 |
| TraesCS7D01G110700.1 | Wheat | peroxisome | 63.11 | 63.69 |
| Os06t0158000-01 | Rice | plasma membrane | 59.6 | 63.58 |
| TraesCS7A01G115900.1 | Wheat | peroxisome | 60.82 | 63.23 |
| Zm00001d045295_P001 | Maize | extracellular | 64.33 | 62.52 |
| HORVU7Hr1G024350.1 | Barley | endoplasmic reticulum, vacuole | 63.11 | 57.98 |
| PGSC0003DMT400064817 | Potato | peroxisome | 55.34 | 55.08 |
| PGSC0003DMT400014954 | Potato | cytosol | 9.3 | 52.59 |
| PGSC0003DMT400023374 | Potato | peroxisome | 48.17 | 47.81 |
| PGSC0003DMT400063438 | Potato | peroxisome | 5.64 | 40.22 |
| PGSC0003DMT400002337 | Potato | mitochondrion | 32.77 | 30.89 |
| PGSC0003DMT400044860 | Potato | peroxisome | 33.23 | 30.03 |
| PGSC0003DMT400000868 | Potato | peroxisome | 31.86 | 28.59 |
| PGSC0003DMT400053079 | Potato | cytosol | 20.27 | 21.45 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400000613 | EnsemblPlantsGene:PGSC0003DMG402000216 | EntrezGene:102578151 | Gene3D:3.40.50.12780 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0008150 | GO:GO:0008152 | InterPro:AMP-binding_CS | InterPro:AMP-dep_Synth/Lig | PANTHER:PTHR43272 | PANTHER:PTHR43272:SF9 |
| PFAM:PF00501 | PGSC:PGSC0003DMG402000216 | RefSeq:XP_006339697.1 | ScanProsite:PS00455 | SUPFAM:SSF56801 | UniParc:UPI0002964CF7 |
| UniProt:M0ZH16 | MapMan:50.6.2 | : | : | : | : |
Description
Long-chain acyl-CoA synthetase 4 [Source:PGSC_GENE;Acc:PGSC0003DMG402000216]
Coordinates
chr1:-:73338974..73346123
Molecular Weight (calculated)
73510.7 Da
IEP (calculated)
7.446
GRAVY (calculated)
-0.172
Length
656 amino acids
Sequence
(BLAST)
(BLAST)
001: MKYVVEVEKA KEGRSNGRPS RGPVYRNVLA KDGFRPLSHS LQSCWDIFCE SVRKFPDNRM LGEREMSHGQ AGKYIWLTYR EVYDLVLKVG ASMRVCGVKQ
101: GGKCGIYGAN CSNWVISMQA CNAHGLYCVP LYDTLGAGAV EYIICHAEVS VAFAEETKIS EVLKAFPKAG KFLKSLISFG KVTQEQKDMA GNFDLKLYSW
201: EDFLLLGMQE KFDLPAKKKT DICTIMYTSG TTGDPKGVMI SNESILSLIS GVNHHMETVG EEFTDKDVYL SYLPLAHIFD RVIEELFISK GASVGFWHKD
301: VKQLIDDIKE LKPTVFCSVP RVLDRIYSGL VEKISSAGFL KHKLFNFTYN YKLGNMSKGY RHSEAAPIFD KIIFNKVKEG LGGNLRLILS GAAPLSSTVE
401: TYLRVVTCAN VLQGYGLTET CAGSFVARPD ELAMVGTVGP PLPIIDVCLE SVPEMGYDAF GDTPRGEICI RGKCLFSGYY KREDLTKEVL VDGWFHTGDV
501: GEWQPDGSMK IIDRKKNIFK LSQGEYVAVE NLEGIYSLAS SVDSIWIYGS SYESFLVAVV NPNMEALRSW ANENGMTGDF DTICENPKAK VHILSELTNI
601: AKEKKLKGFE FIKAVHLDPV PFDMERELIT PTHKKKRAQF LKYYQNNIDT LYKNTR
101: GGKCGIYGAN CSNWVISMQA CNAHGLYCVP LYDTLGAGAV EYIICHAEVS VAFAEETKIS EVLKAFPKAG KFLKSLISFG KVTQEQKDMA GNFDLKLYSW
201: EDFLLLGMQE KFDLPAKKKT DICTIMYTSG TTGDPKGVMI SNESILSLIS GVNHHMETVG EEFTDKDVYL SYLPLAHIFD RVIEELFISK GASVGFWHKD
301: VKQLIDDIKE LKPTVFCSVP RVLDRIYSGL VEKISSAGFL KHKLFNFTYN YKLGNMSKGY RHSEAAPIFD KIIFNKVKEG LGGNLRLILS GAAPLSSTVE
401: TYLRVVTCAN VLQGYGLTET CAGSFVARPD ELAMVGTVGP PLPIIDVCLE SVPEMGYDAF GDTPRGEICI RGKCLFSGYY KREDLTKEVL VDGWFHTGDV
501: GEWQPDGSMK IIDRKKNIFK LSQGEYVAVE NLEGIYSLAS SVDSIWIYGS SYESFLVAVV NPNMEALRSW ANENGMTGDF DTICENPKAK VHILSELTNI
601: AKEKKLKGFE FIKAVHLDPV PFDMERELIT PTHKKKRAQF LKYYQNNIDT LYKNTR
001: MSQQKKYIFQ VEEGKEGSDG RPSVGPVYRS IFAKDGFPDP IEGMDSCWDV FRMSVEKYPN NPMLGRREIV DGKPGKYVWQ TYQEVYDIVM KLGNSLRSVG
101: VKDEAKCGIY GANSPEWIIS MEACNAHGLY CVPLYDTLGA DAVEFIISHS EVSIVFVEEK KISELFKTCP NSTEYMKTVV SFGGVSREQK EEAETFGLVI
201: YAWDEFLKLG EGKQYDLPIK KKSDICTIMY TSGTTGDPKG VMISNESIVT LIAGVIRLLK SANEALTVKD VYLSYLPLAH IFDRVIEECF IQHGAAIGFW
301: RGDVKLLIED LAELKPTIFC AVPRVLDRVY SGLQKKLSDG GFLKKFIFDS AFSYKFGYMK KGQSHVEASP LFDKLVFSKV KQGLGGNVRI ILSGAAPLAS
401: HVESFLRVVA CCHVLQGYGL TESCAGTFVS LPDELGMLGT VGPPVPNVDI RLESVPEMEY DALASTARGE ICIRGKTLFS GYYKREDLTK EVLIDGWLHT
501: GDVGEWQPDG SMKIIDRKKN IFKLSQGEYV AVENIENIYG EVQAVDSVWV YGNSFESFLI AIANPNQHIL ERWAAENGVS GDYDALCQNE KAKEFILGEL
601: VKMAKEKKMK GFEIIKAIHL DPVPFDMERD LLTPTFKKKR PQLLKYYQSV IDEMYKTINA KFASRG
101: VKDEAKCGIY GANSPEWIIS MEACNAHGLY CVPLYDTLGA DAVEFIISHS EVSIVFVEEK KISELFKTCP NSTEYMKTVV SFGGVSREQK EEAETFGLVI
201: YAWDEFLKLG EGKQYDLPIK KKSDICTIMY TSGTTGDPKG VMISNESIVT LIAGVIRLLK SANEALTVKD VYLSYLPLAH IFDRVIEECF IQHGAAIGFW
301: RGDVKLLIED LAELKPTIFC AVPRVLDRVY SGLQKKLSDG GFLKKFIFDS AFSYKFGYMK KGQSHVEASP LFDKLVFSKV KQGLGGNVRI ILSGAAPLAS
401: HVESFLRVVA CCHVLQGYGL TESCAGTFVS LPDELGMLGT VGPPVPNVDI RLESVPEMEY DALASTARGE ICIRGKTLFS GYYKREDLTK EVLIDGWLHT
501: GDVGEWQPDG SMKIIDRKKN IFKLSQGEYV AVENIENIYG EVQAVDSVWV YGNSFESFLI AIANPNQHIL ERWAAENGVS GDYDALCQNE KAKEFILGEL
601: VKMAKEKKMK GFEIIKAIHL DPVPFDMERD LLTPTFKKKR PQLLKYYQSV IDEMYKTINA KFASRG
Arabidopsis Description
LACS4Long chain acyl-CoA synthetase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0A0]
SUBAcon: [peroxisome]
SUBAcon: [peroxisome]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.