Factsheet for PGSC0003DMT400002337

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1
plastid 2
mitochondrion 3
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	peroxisome
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g018580.1.1	Tomato	plastid	85.06	97.05
Os11t0169800-01	Rice	plastid	41.81	80.17
VIT_18s0001g02810.t01	Wine grape	vacuole	79.6	79.48
KRH53234	Soybean	mitochondrion	75.72	75.94
KRH18736	Soybean	peroxisome, plastid	75.57	75.57
GSMUA_Achr8P30270_001	Banana	peroxisome, plastid	75.43	75.32
AT1G77590.1	Thale cress	peroxisome, plastid	74.71	75.25
GSMUA_Achr11P...	Banana	endoplasmic reticulum	75.14	75.04
OQU82968	Sorghum	endoplasmic reticulum, plasma membrane	74.71	74.61
Zm00001d053009_P009	Maize	plastid	74.57	74.36
TraesCS5D01G129800.1	Wheat	golgi	74.57	74.36
TraesCS5B01G118000.1	Wheat	endoplasmic reticulum	74.57	74.36
TraesCS5A01G117700.1	Wheat	endoplasmic reticulum, vacuole	74.57	74.36
Os12t0168700-01	Rice	vacuole	74.43	74.21
TraesCS4B01G110600.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	74.28	74.17
CDX79212	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	73.85	74.17
HORVU4Hr1G019780.1	Barley	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	74.14	74.03
TraesCS4D01G108300.1	Wheat	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	74.14	74.03
CDX68052	Canola	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	73.71	74.03
KXG23059	Sorghum	endoplasmic reticulum	74.14	73.93
Bra003678.1-P	Field mustard	endoplasmic reticulum, extracellular, golgi, peroxisome, plasma membrane, vacuole	73.56	73.88
TraesCS4A01G207000.1	Wheat	golgi	74.28	73.86
HORVU5Hr1G036460.1	Barley	endoplasmic reticulum	73.85	73.64
GSMUA_Achr1P13190_001	Banana	vacuole	67.67	73.36
Zm00001d023538_P002	Maize	plastid	73.28	73.07
GSMUA_Achr2P08130_001	Banana	peroxisome, plastid	57.33	70.37
KRH16338	Soybean	plastid, vacuole	65.37	70.32
PGSC0003DMT400044860	Potato	peroxisome	62.36	59.78
PGSC0003DMT400000868	Potato	peroxisome	62.5	59.51
PGSC0003DMT400063438	Potato	peroxisome	4.45	33.7
PGSC0003DMT400000613	Potato	peroxisome	30.89	32.77
PGSC0003DMT400064817	Potato	peroxisome	30.6	32.32
PGSC0003DMT400023374	Potato	peroxisome	30.6	32.22
PGSC0003DMT400014954	Potato	cytosol	4.02	24.14
PGSC0003DMT400053079	Potato	cytosol	20.4	22.9

Protein Annotations

EntrezGene:102596335	Gene3D:3.40.50.12780	MapMan:50.6.2	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	GO:GO:0003674
GO:GO:0003824	GO:GO:0004467	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006629	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009941
GO:GO:0009987	GO:GO:0016020	UniProt:M0ZJY7	PFAM:PF00501	EnsemblPlantsGene:PGSC0003DMG400000892	PGSC:PGSC0003DMG400000892
EnsemblPlants:PGSC0003DMT400002337	ScanProsite:PS00455	PANTHER:PTHR43272	PANTHER:PTHR43272:SF29	SUPFAM:SSF56801	UniParc:UPI0002959EA5
RefSeq:XP_006351910.1	SEG:seg	:	:	:	:

Description

Long-chain-fatty-acid CoA ligase [Source:PGSC_GENE;Acc:PGSC0003DMG400000892]

Coordinates

chr11:+:11155283..11164114

Molecular Weight (calculated)

75945.9 Da

IEP (calculated)

7.819

GRAVY (calculated)

0.007

Length

696 amino acids

Sequence
(BLAST)

001: MGPYVAGVLV PLVVTILLQN RRSRKKRGLP ADVGGEPGYA IRNSRFNAPV ETAWDGITTL AELFEYSCKK HYHKKLLGTR KLLSREMEVS ADGRSFEKLH
101: LGDYEWLSYG QAFEIVCNFS SGLALLGHQR EERVAIFADT CEEWLMALQS CFRRNVTVVT IYASLGEEAL CYSLNQTEVT TVICGQKELK KLVDISGQLD
201: TVKRVICIDN EIPSSAIVAA GSNWVLKTFS EVETLGRGNP VDPDLPLAAD IAVIMYTSGS TGLPKGVMMT HRNVLATASA VLTIVPGLGS KDVYLAYLPL
301: AHILELAAET IVPGIGGSIG YGSPLTLTDT SNKIKKGTKG DASALSPTVM AAVPAILDRV RDGVRKKVDA AGGLSKKLFD LAYSRRLSAI NGNWLGAWGL
401: ERHFWNLLVF KKVQAILGGR IRFILSGGAP LSGDTQRFIN ICLGAPIGQG YGLTETCAGG TFSDYDDTSV GRVGPPLPCS YIKLIDWAEG GYLTSDSPMP
501: RGEIVIGGPN VTVGYFKNEE KTKEVYKVDE RGMRWFYTGD VGQFHADGCL EIIDRKKDIV KLQHGEYVSL GKVEAVLIVS PYVDNIMLHA DPFHSYCVAI
601: VVAAQAAVED WARKHGINFV DFQELCQKEE TIKEVYASLV KAAKGARLEK FEIPAKIKLL SEAWTPESGL VTAALKLKRD VIKKAFSQEL AQLYSS

Best Arabidopsis Sequence Match ( AT1G77590.1 )
(BLAST)

001: MIPYAAGVIV PLALTFLVQK SKKEKKRGVV VDVGGEPGYA IRNHRFTEPV SSHWEHISTL PELFEISCNA HSDRVFLGTR KLISREIETS EDGKTFEKLH
101: LGDYEWLTFG KTLEAVCDFA SGLVQIGHKT EERVAIFADT REEWFISLQG CFRRNVTVVT IYSSLGEEAL CHSLNETEVT TVICGSKELK KLMDISQQLE
201: TVKRVICMDD EFPSDVNSNW MATSFTDVQK LGRENPVDPN FPLSADVAVI MYTSGSTGLP KGVMMTHGNV LATVSAVMTI VPDLGKRDIY MAYLPLAHIL
301: ELAAESVMAT IGSAIGYGSP LTLTDTSNKI KKGTKGDVTA LKPTIMTAVP AILDRVRDGV RKKVDAKGGL SKKLFDFAYA RRLSAINGSW FGAWGLEKLL
401: WDVLVFRKIR AVLGGQIRYL LSGGAPLSGD TQRFINICVG APIGQGYGLT ETCAGGTFSE FEDTSVGRVG APLPCSFVKL VDWAEGGYLT SDKPMPRGEI
501: VIGGSNITLG YFKNEEKTKE VYKVDEKGMR WFYTGDIGRF HPDGCLEIID RKKDIVKLQH GEYVSLGKVE AALSISPYVE NIMVHADSFY SYCVALVVAS
601: QHTVEGWASK QGIDFANFEE LCTKEQAVKE VYASLVKAAK QSRLEKFEIP AKIKLLASPW TPESGLVTAA LKLKRDVIRR EFSEDLTKLY A

Arabidopsis Description

LACS9Long chain acyl-CoA synthetase 9, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9CAP8]
SUBAcon: [peroxisome,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.