Factsheet for PGSC0003DMT400063438

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	peroxisome
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	peroxisome

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400029209

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27600.1	PGSC0003DMT400029209	AT5G56290.1	16256065

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX92843	Canola	peroxisome	50.0	21.5
Bra020793.1-P	Field mustard	plastid	60.87	8.9
Solyc01g099100.2.1	Tomato	plastid	66.3	8.76
VIT_14s0128g00720.t01	Wine grape	peroxisome	59.78	8.69
Solyc09g075790.2.1	Tomato	peroxisome	57.61	8.44
EES15543	Sorghum	peroxisome	61.96	8.36
CDY05217	Canola	plastid	60.87	8.15
CDY27725	Canola	plastid	60.87	8.15
Zm00001d023238_P002	Maize	plasma membrane	59.78	7.96
GSMUA_Achr8P24080_001	Banana	mitochondrion	58.7	7.94
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	59.78	7.9
KXG27718	Sorghum	peroxisome	59.78	7.89
AT3G05970.1	Thale cress	plastid	59.78	7.85
CDX74115	Canola	plastid	58.7	7.76
CDY49993	Canola	mitochondrion	58.7	7.76
Bra001177.1-P	Field mustard	plastid	58.7	7.76
TraesCS4A01G184900.2	Wheat	peroxisome	58.7	7.76
TraesCS4B01G133700.3	Wheat	peroxisome	58.7	7.76
VIT_05s0020g03080.t01	Wine grape	peroxisome	58.7	7.75
Bra009951.1-P	Field mustard	peroxisome	58.7	7.74
CDX80638	Canola	peroxisome	58.7	7.73
CDX86151	Canola	peroxisome	58.7	7.73
TraesCS4D01G128700.3	Wheat	mitochondrion	57.61	7.61
Solyc09g075770.1.1	Tomato	peroxisome	57.61	7.59
TraesCS5B01G131800.3	Wheat	peroxisome	57.61	7.55
AT5G27600.1	Thale cress	peroxisome, plastid	56.52	7.43
TraesCS5A01G133200.2	Wheat	peroxisome	56.52	7.41
Os11t0147000-01	Rice	peroxisome	56.52	7.33
KRH35544	Soybean	endoplasmic reticulum, mitochondrion	55.43	7.33
HORVU5Hr1G040740.17	Barley	peroxisome	56.52	7.27
TraesCS5D01G141300.1	Wheat	peroxisome	55.43	7.26
Os12t0143900-01	Rice	peroxisome	55.43	7.21
KRG91264	Soybean	peroxisome	54.35	7.16
HORVU4Hr1G025820.9	Barley	peroxisome, plastid	57.61	7.07
PGSC0003DMT400000613	Potato	peroxisome	40.22	5.64
PGSC0003DMT400064817	Potato	peroxisome	39.13	5.46
PGSC0003DMT400023374	Potato	peroxisome	38.04	5.3
PGSC0003DMT400002337	Potato	mitochondrion	33.7	4.45
KRH13185	Soybean	cytosol	29.35	4.32
PGSC0003DMT400000868	Potato	peroxisome	32.61	4.1
PGSC0003DMT400044860	Potato	peroxisome	29.35	3.72
PGSC0003DMT400053079	Potato	cytosol	22.83	3.39
CDY65251	Canola	peroxisome	2.17	0.85
PGSC0003DMT400014954	Potato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400063438	EnsemblPlantsGene:PGSC0003DMG400024685	Gene3D:2.30.38.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF17	PFAM:PF00501	PGSC:PGSC0003DMG400024685
SUPFAM:SSF56801	UniParc:UPI000295928D	UniProt:M1CAP0	MapMan:35.1	:	:

Description

Long-chain acyl-CoA synthetase [Source:PGSC_GENE;Acc:PGSC0003DMG400024685]

Coordinates

chr1:+:76916914..76919492

Molecular Weight (calculated)

10805.9 Da

IEP (calculated)

4.596

GRAVY (calculated)

-0.275

Length

92 amino acids

Sequence
(BLAST)

1: MSYTSEDQPH PRGEICVRGP IVFEGYYKDE VQTYIPYTLI FHFLFCHCYE FLQDNLPDLV VNRKEVVDDD GWLHTGDIGL WLPGGRLKII DR

Best Arabidopsis Sequence Match ( AT3G05970.1 )
(BLAST)

001: MDSSSSSSSA AARRRINAIH SHLVTSSRSS PLLRSNPTAG EFCLDNGYSV VLPEKLNTGS WNVYRSAKSP FKLVSRFPDH PDIATLHDNF EHAVHDFRDY
101: KYLGTRVRVD GTVGDYKWMT YGEAGTARTA LGSGLVHHGI PMGSSVGIYF INRPEWLIVD HACSSYSYVS VPLYDTLGPD AVKFIVNHAT VQAIFCVAET
201: LNSLLSCLSE MPSVRLVVVV GGLIESLPSL PSSSGVKVVS YSVLLNQGRS NPQRFFPPKP DDVATICYTS GTTGTPKGVV LTHANLIANV AGSSFSVKFF
301: SSDVYISYLP LAHIYERANQ ILTVYFGVAV GFYQGDNMKL LDDLAALRPT VFSSVPRLYN RIYAGIINAV KTSGGLKERL FNAAYNAKKQ ALLNGKSASP
401: IWDRLVFNKI KDRLGGRVRF MTSGASPLSP EVMEFLKVCF GGRVTEGYGM TETSCVISGM DEGDNLTGHV GSPNPACEVK LVDVPEMNYT SADQPHPRGE
501: ICVRGPIIFT GYYKDEIQTK EVIDEDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY AKCKFVGQCF IYGDSFNSSL VAVVSVDPDV
601: LKSWAASEGI KGGDLRELCN NPRVKAAVLS DMDTVGREAQ LRGFEFAKAV TLVLEPFTLE NGLLTPTFKI KRPQAKEYFA EAITNMYKEL GASDPSANRG
701: L

Arabidopsis Description

LACS6Long chain acyl-CoA synthetase 6, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.