Factsheet for Solyc01g099100.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
cytosol 1
peroxisome 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc10g005650.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27600.1	Solyc10g005650.2.1	AT5G56290.1	16256065

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0128g00720.t01	Wine grape	peroxisome	72.41	79.62
EES15543	Sorghum	peroxisome	73.13	74.63
Bra009951.1-P	Field mustard	peroxisome	74.57	74.36
TraesCS4A01G184900.2	Wheat	peroxisome	74.28	74.28
CDX80638	Canola	peroxisome	74.57	74.25
CDX86151	Canola	peroxisome	74.57	74.25
Zm00001d023238_P002	Maize	plasma membrane	73.71	74.24
TraesCS4B01G133700.3	Wheat	peroxisome	74.14	74.14
AT5G27600.1	Thale cress	peroxisome, plastid	74.43	74.0
Os12t0143900-01	Rice	peroxisome	75.0	73.83
TraesCS4D01G128700.3	Wheat	mitochondrion	73.71	73.71
TraesCS5B01G131800.3	Wheat	peroxisome	73.99	73.36
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	72.99	72.99
TraesCS5D01G141300.1	Wheat	peroxisome	73.56	72.93
TraesCS5A01G133200.2	Wheat	peroxisome	73.56	72.93
Solyc09g075790.2.1	Tomato	peroxisome	65.37	72.45
Os11t0147000-01	Rice	peroxisome	73.71	72.36
KXG27718	Sorghum	peroxisome	72.27	72.17
Solyc09g075770.1.1	Tomato	peroxisome	70.4	70.2
HORVU5Hr1G040740.17	Barley	peroxisome	71.84	69.93
HORVU4Hr1G025820.9	Barley	peroxisome, plastid	72.84	67.6
PGSC0003DMT400063438	Potato	peroxisome	8.76	66.3
Solyc08g008310.2.1	Tomato	peroxisome	35.63	41.54
Solyc01g109180.2.1	Tomato	nucleus	38.65	40.82
Solyc08g082280.2.1	Tomato	nucleus, plastid	37.64	39.82
Solyc01g095750.2.1	Tomato	peroxisome	35.49	37.37
Solyc11g018580.1.1	Tomato	plastid	28.3	32.3
Solyc07g045290.2.1	Tomato	plastid	29.6	28.37
Solyc12g009040.1.1	Tomato	plastid	28.45	27.58
Solyc09g092450.2.1	Tomato	plastid	23.13	22.27

Protein Annotations

Gene3D:3.40.50.12780	MapMan:5.7.3.1	InterPro:AMP-bd_C	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	GO:GO:0003674
GO:GO:0003824	GO:GO:0004467	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005777	GO:GO:0006629	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009628
GO:GO:0009651	GO:GO:0009987	GO:GO:0010193	UniProt:K4B0U7	PFAM:PF00501	PFAM:PF13193
ScanProsite:PS00455	PANTHER:PTHR43272	PANTHER:PTHR43272:SF17	SUPFAM:SSF56801	EnsemblPlantsGene:Solyc01g099100.2	EnsemblPlants:Solyc01g099100.2.1
UniParc:UPI0002768B6D	:	:	:	:	:

Description

Long chain acyl-CoA synthetase 7, peroxisomal [Source:Projected from Arabidopsis thaliana (AT5G27600) UniProtKB/Swiss-Prot;Acc:Q8LKS5]

Coordinates

chr1:+:89415113..89430884

Molecular Weight (calculated)

77017.6 Da

IEP (calculated)

7.288

GRAVY (calculated)

-0.105

Length

696 amino acids

Sequence
(BLAST)

001: MESSAERRLK AIQSHLVPAT DDVSRSLIRS NPTAGEFLLG QGFSVVLPEK LQTGKWNVYR SARSPLKLVT RFPDHPEIGT LHDNFEHAIQ TFQDYKYLGS
101: RIRVDGTVGD YKWMTYGEAG TARTAIGSGL HYYGLQPGAR VGLYFINRPE WMIVDHACSA YSYTSIPLYD TLGPDAVKYI VNHADVQAIF CVPTTLNTLL
201: TFLSEIPSVR LIVVVGGIDE HLPSLPSTTG MKLLSYTRLL SQGRSSMQPF CPPRPEDIAT ICYTSGTTGT PKGVVLSHAN LIASVAGMTL AIKFYPSDIY
301: ISYLPLAHIY ERANQITSVY SGVAVGFYQG DNLKLMDDLV TLRPTIFSSV PRLFNRIYAG ITNAVQTSGV LKQRLFNAAY NSKKQAVMNG RKPSPMWDRL
401: VFNKIKDKLG GRVRLMTSGA SPLSPDVLEF LRVCFGCQVM EGYGMTETSC VISSMDETDN LIGHVGSPNT ACEIKLVDVP EMSYTSEDQP HPRGEICVRG
501: PIVFQGYYKD EVQTKEVVDD DGWLHTGDIG LWLPGGRLKI IDRKKNIFKL AQGEYIAPEK IENVYAKCKF IAQCFVYGDS FNSSLVAIVC VEPDVLKEWA
601: SSEGIKYEDL GQLCNDPRAR AAVLAEMDAV GREAQLRGFE FAKAVTLVVE PFTIENGLLT PTFKVKRPQA KAYFAKAISD MYNELSTSDP VSQKSL

Best Arabidopsis Sequence Match ( AT3G05970.1 )
(BLAST)

001: MDSSSSSSSA AARRRINAIH SHLVTSSRSS PLLRSNPTAG EFCLDNGYSV VLPEKLNTGS WNVYRSAKSP FKLVSRFPDH PDIATLHDNF EHAVHDFRDY
101: KYLGTRVRVD GTVGDYKWMT YGEAGTARTA LGSGLVHHGI PMGSSVGIYF INRPEWLIVD HACSSYSYVS VPLYDTLGPD AVKFIVNHAT VQAIFCVAET
201: LNSLLSCLSE MPSVRLVVVV GGLIESLPSL PSSSGVKVVS YSVLLNQGRS NPQRFFPPKP DDVATICYTS GTTGTPKGVV LTHANLIANV AGSSFSVKFF
301: SSDVYISYLP LAHIYERANQ ILTVYFGVAV GFYQGDNMKL LDDLAALRPT VFSSVPRLYN RIYAGIINAV KTSGGLKERL FNAAYNAKKQ ALLNGKSASP
401: IWDRLVFNKI KDRLGGRVRF MTSGASPLSP EVMEFLKVCF GGRVTEGYGM TETSCVISGM DEGDNLTGHV GSPNPACEVK LVDVPEMNYT SADQPHPRGE
501: ICVRGPIIFT GYYKDEIQTK EVIDEDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY AKCKFVGQCF IYGDSFNSSL VAVVSVDPDV
601: LKSWAASEGI KGGDLRELCN NPRVKAAVLS DMDTVGREAQ LRGFEFAKAV TLVLEPFTLE NGLLTPTFKI KRPQAKEYFA EAITNMYKEL GASDPSANRG
701: L

Arabidopsis Description

LACS6Long chain acyl-CoA synthetase 6, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.