Factsheet for Os11t0147000-01

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 1
mitochondrion 2
peroxisome 4
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os08t0500100-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27600.1	Os08t0500100-02	AT5G56290.1	16256065

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0143900-01	Rice	peroxisome	88.58	88.83
TraesCS5B01G131800.3	Wheat	peroxisome	86.18	87.04
TraesCS5A01G133200.2	Wheat	peroxisome	85.47	86.32
TraesCS5D01G141300.1	Wheat	peroxisome	85.33	86.18
EES15543	Sorghum	peroxisome	81.95	85.19
Zm00001d023238_P002	Maize	plasma membrane	82.09	84.23
Zm00001d052485_P001	Maize	mitochondrion, peroxisome	82.09	83.62
KXG27718	Sorghum	peroxisome	81.95	83.36
HORVU5Hr1G040740.17	Barley	peroxisome	82.37	81.68
GSMUA_Achr8P24080_001	Banana	mitochondrion	71.65	74.71
VIT_05s0020g03080.t01	Wine grape	peroxisome	73.06	74.32
Solyc01g099100.2.1	Tomato	plastid	72.36	73.71
AT3G05970.1	Thale cress	plastid	71.79	72.61
Bra001177.1-P	Field mustard	plastid	70.94	72.27
CDX74115	Canola	plastid	70.8	72.13
KRG91264	Soybean	peroxisome	70.8	71.92
CDY49993	Canola	mitochondrion	70.52	71.84
KRH35544	Soybean	endoplasmic reticulum, mitochondrion	70.24	71.55
CDY05217	Canola	plastid	69.25	71.47
Solyc09g075790.2.1	Tomato	peroxisome	63.19	71.34
CDY27725	Canola	plastid	69.11	71.32
VIT_14s0128g00720.t01	Wine grape	peroxisome	63.61	71.25
Bra020793.1-P	Field mustard	plastid	63.19	71.22
AT5G27600.1	Thale cress	peroxisome, plastid	69.39	70.29
CDX80638	Canola	peroxisome	69.25	70.24
Bra009951.1-P	Field mustard	peroxisome	69.11	70.2
CDX86151	Canola	peroxisome	69.11	70.1
CDX92843	Canola	peroxisome	20.87	69.16
Solyc09g075770.1.1	Tomato	peroxisome	65.16	66.19
PGSC0003DMT400063438	Potato	peroxisome	7.33	56.52
CDY65251	Canola	peroxisome	17.07	51.71
KRH13185	Soybean	cytosol	36.53	41.44
Os01t0681200-01	Rice	plasma membrane	37.8	40.3
Os06t0158000-01	Rice	plasma membrane	34.84	40.16
Os11t0558300-01	Rice	peroxisome	36.39	39.03
Os05t0132100-02	Rice	plasma membrane	36.11	38.27
Os01t0655800-01	Rice	plasma membrane	36.67	38.24
Os11t0169800-01	Rice	plastid	19.32	37.74
Os12t0168700-01	Rice	vacuole	29.9	30.37
Os05t0317200-01	Rice	plastid	30.75	30.03
GSMUA_AchrUn_...	Banana	peroxisome	4.94	27.78
Os03t0845500-01	Rice	plastid	23.55	22.27

Protein Annotations

EnsemblPlants:Os11t0147000-01	EnsemblPlantsGene:Os11g0147000	EntrezGene:4349764	Gene3D:3.40.50.12780	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	InterPro:AMP-binding_CS	InterPro:AMP-dep_Synth/Lig	PANTHER:PTHR43272	PANTHER:PTHR43272:SF17
PFAM:PF00501	ProteinID:ABA91469.1	ProteinID:BAF27584.1	ProteinID:BAT12671.1	RefSeq:XP_015617433.1	ScanProsite:PS00455
SEG:seg	SUPFAM:SSF56801	UniParc:UPI00006824BF	UniProt:Q2RAL6	MapMan:5.7.3.1	:

Description

Similar to Long chain acyl-CoA synthetase 6 (EC 6.2.1.3). (Os11t0147000-01)

Coordinates

chr11:-:2131922..2141236

Molecular Weight (calculated)

78259.3 Da

IEP (calculated)

7.583

GRAVY (calculated)

-0.072

Length

709 amino acids

Sequence
(BLAST)

001: MRGNGRGREE EGNSPMGRRL RAVSAHLLPP ASTTTTTGGV DLAANPTAGE YAHVQGYSAV LPEKLQTGKW NVYRNAKTPL RLIDRFPDTP DIATLHDNFV
101: YAVETFRDCR YLGTRICADG TVGDYKWMTY GEASTNRTAI GSGLIYHGIP EGACIGLYFI NRPEWIIVDH ACAAYSFVSV PLYDTLGPDA VQFIVNHATV
201: EAIFCVPQTL STLLSFITQM PCVRLIVVIG GDNANMPSTP TSTGVEIIIY SRLLNQGKMS SRPFRPPKPE DVATICYTSG TTGTPKGVVL SHRNLIANVA
301: GSSVVIKFYP SDVYISYLPL AHIYERVNQI ALLHYGVAIG FYQGDNLKLM DDLAALRPTV FSSVPRLYNR IYAAITNAVK ESGGLKERFF HAAYNAKRQA
401: IMNGRNLSPM WDKLVFNKIK ARLGGRVRLM SSGASPLSAD VMEFLRVCFG CLVIEGYGMT ETSCVIATMD CDDRLIGHVG PPNPSCEIKL VDVPEMNYTS
501: EDQPYPRGEI CVRGTTIFFG YYKDEIQTRE VIDEDGWLHT GDIGLWLPGG RLKIIDRKKN IFKLAQGEYI APEKIENVYA KCKFIAQCFI YGDSLNSSLV
601: AVVAVEPEVL KAWAASEGIQ YEDLRQLCAD TRARAAVLAD MDSIGKEAQL RGFEFAKAVT LVAEPFTLEN GLLTPTFKIK RPQAKAYFAK EIADMYAQLR
701: EAESTKSKL

Best Arabidopsis Sequence Match ( AT3G05970.1 )
(BLAST)

001: MDSSSSSSSA AARRRINAIH SHLVTSSRSS PLLRSNPTAG EFCLDNGYSV VLPEKLNTGS WNVYRSAKSP FKLVSRFPDH PDIATLHDNF EHAVHDFRDY
101: KYLGTRVRVD GTVGDYKWMT YGEAGTARTA LGSGLVHHGI PMGSSVGIYF INRPEWLIVD HACSSYSYVS VPLYDTLGPD AVKFIVNHAT VQAIFCVAET
201: LNSLLSCLSE MPSVRLVVVV GGLIESLPSL PSSSGVKVVS YSVLLNQGRS NPQRFFPPKP DDVATICYTS GTTGTPKGVV LTHANLIANV AGSSFSVKFF
301: SSDVYISYLP LAHIYERANQ ILTVYFGVAV GFYQGDNMKL LDDLAALRPT VFSSVPRLYN RIYAGIINAV KTSGGLKERL FNAAYNAKKQ ALLNGKSASP
401: IWDRLVFNKI KDRLGGRVRF MTSGASPLSP EVMEFLKVCF GGRVTEGYGM TETSCVISGM DEGDNLTGHV GSPNPACEVK LVDVPEMNYT SADQPHPRGE
501: ICVRGPIIFT GYYKDEIQTK EVIDEDGWLH TGDIGLWLPG GRLKIIDRKK NIFKLAQGEY IAPEKIENVY AKCKFVGQCF IYGDSFNSSL VAVVSVDPDV
601: LKSWAASEGI KGGDLRELCN NPRVKAAVLS DMDTVGREAQ LRGFEFAKAV TLVLEPFTLE NGLLTPTFKI KRPQAKEYFA EAITNMYKEL GASDPSANRG
701: L

Arabidopsis Description

LACS6Long chain acyl-CoA synthetase 6, peroxisomal [Source:UniProtKB/Swiss-Prot;Acc:Q8LPS1]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.